KEGG   Heterocephalus glaber (naked mole-rat): 101704694
Entry
101704694         CDS       T02812                                 
Symbol
Snrnp40
Name
(RefSeq) small nuclear ribonucleoprotein U5 subunit 40
  KO
K12857  Prp8 binding protein
Organism
hgl  Heterocephalus glaber (naked mole-rat)
Pathway
hgl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hgl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101704694 (Snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hgl03041]
    101704694 (Snrnp40)
Spliceosome [BR:hgl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    101704694 (Snrnp40)
 Complex C
   U5 SnRNP specific factors
    101704694 (Snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_TEP1_2nd WD40_WDHD1_1st EIF3I WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_EML ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_EIPR1 Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st Beta-prop_SPT8 WD40_RFWD3 Beta-prop_SCAP NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st Beta-prop_DCAF4 Beta-prop_Vps41 Ge1_WD40 Beta-prop_RIG_1st Beta-prop_NWD2_C Cytochrom_D1
Other DBs
NCBI-GeneID: 101704694
NCBI-ProteinID: XP_012929650
LinkDB
Position
Un
AA seq 332 aa
MIEQQKRKAPELPLVPVKRQRHELLLAAAGSGPGAGQQQATPGALLQAGPPRCSSLQAPI
MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKMTKVRSQEVWIYFAVRVWDVR
PFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPG
HAGSINEVAFHPDEPIILSASSDKRLYMGEIQ
NT seq 999 nt   +upstreamnt  +downstreamnt
atgatagaacagcagaagcgcaaggccccggagttgccactggttccagtcaagcggcag
cgacatgagttgctcctggcagcggcggggtcaggccccggagcagggcagcagcaggcg
accccgggagctttacttcaagcgggacctccaaggtgttcctcccttcaagccccaatc
atgctactctcaggacatgaaggagaagtgtactgctgcaagtttcaccccaatggctcc
accttggcatctgcaggatttgaccgattgatactgctgtggaatgtctatggtgactgt
gataattatgccacactgaaaggacatagtggagcagtgatggagctccattataacaca
gatggcagtatgctcttctccgcatccacagataaaactgtggcagtatgggatagtgaa
acaggcgaaagggttaaaaggctgaagggacatacttcctttgtaaattcctgttaccca
gccaggaggggaccccagcttgtctgcactggcagcgatgatggtacagttaagctttgg
gacatccggaagaaagcagctatccagacgtttcaaaacacataccaggtattagctgtg
acctttaatgacacaagtgatcagattatctctggtggaatagacaatgatataaagatg
actaaggtaaggtcccaagaggtttggatttattttgcagtgcgtgtctgggatgtccgt
ccatttgcccctaaagagaggtgtgtaaagatatttcaaggaaatgtgcataactttgaa
aagaatctcctgagatgttcttggtcacctgatgggagcaaaatagcagctggctcagcg
gacaggtttgtgtatgtgtgggacaccacaagcaggagaatactgtataagctgcctggc
catgctggctccatcaatgaagtagctttccatcctgatgagcccatcattctctcagca
tctagtgacaagagactgtatatgggggagattcagtga

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