Heterocephalus glaber (naked mole-rat): 101707355
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Entry
101707355 CDS
T02812
Symbol
Patl1
Name
(RefSeq) PAT1 homolog 1, processing body mRNA decay factor
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
hgl
Heterocephalus glaber (naked mole-rat)
Pathway
hgl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hgl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101707355 (Patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hgl03019
]
101707355 (Patl1)
Messenger RNA biogenesis [BR:
hgl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101707355 (Patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
101707355 (Patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
101707355
NCBI-ProteinID:
XP_004869779
UniProt:
A0A0P6J4G7
LinkDB
All DBs
Position
Un
AA seq
770 aa
AA seq
DB search
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAIDDDWQEAHERLAELEEKL
PAAANEQAGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGS
LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRSTSP
VIGSPPVRAVPIGTPPKQMAIPSFSQQILCPKPVHVRPPMPPRYPAPYGERMSPNQLCSV
PNSSLLGHPFAPSVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAVNPKL
LQGRVGQMLPPAPGFRAFFSGPPPTTPPSQPRPPGPGPPLQTLRSQAPMFRADTTHLHPQ
HRRLLHQRQQQSRNQHRSLNGAGDRGSHRCSQQDHLRKDPYANLMLQREKDWVSKIQMMQ
LQSTDPYLDDFYYQNYFEKLEKLSAAEEMQGDGPKKERTKLITPQVAKLEQAYKPVQFEG
SLGKLTVSSVNNPRKMIDAVVPSRGEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYE
RRYLLSLEEERPALLDERKHKVCGMYDNLRAKLPGQDRPSDDHFVQIMCIRKGKRMVARI
LPFLSTEQAADILLTTARNLPFLIKKDSQDEVLPCLLRPFSVLLYHLPPVTVTGLLQQLM
NLPQSAAAPAPCNPHLTAVLQNKFGLSLLFTLLSRVEDLQSSEPLTESSQSAQWTEVMFM
ATRELLRIPQAALAKPVSIPTNLVSLFSRYVDQQKLNLLETKLQLVQGIR
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctacgagtctttggaggattgtcctctagatgaagatgaagatgcatttcag
ggccttggagaagaagatgaggagattgatcagttcaacgatgatacatttgggtcaggt
gcaattgacgatgactggcaggaagcgcacgagcgcctggccgagttggaagagaagcta
ccggcggcagctaatgagcaagcaggcaatggggagagggacgagatggacctgctcggt
gaccacgaggagaatctggctgaaaggctcagcaagatggtgattgagaatgagctagaa
gatccagctatcatgagagcagtgcagaccaggccagttttgcaacctcaaccaggaagt
ctgaattccagcatctgggatggatccgaagttctgaggcgaatccgaggcccactactt
gctcaggaaatgcctacagtgtctgtgctagaatatgccttgccgcagaggcccccgcag
ggcccagaggacgatcgggatctctctgagcgcgccctgccgcggaggtcaacttcacct
gtcatcgggagcccccccgtgagggctgtgcccataggcaccccacctaagcagatggcc
atacccagctttagccagcagattctgtgtccgaagcctgtgcatgtccggcccccgatg
ccaccacgttatcctgctccctatggcgagaggatgtctccaaaccagctctgcagtgtc
ccgaactcttccctcctgggtcacccgtttgctcccagcgtccctccggtcctcagcccc
ctccagagagcacagcttcttggaggcgctcagctgcagcctggacggatgtctcccagc
cagtttgcacgagttcctgggttcgttgggagcccccttgctgccgtgaaccccaagctg
ctgcaagggcgagttgggcagatgctccccccggcccccggcttccgtgccttcttcagt
ggcccgccccccaccacaccgccttcgcagccacgccctcccggcccagggccacctctg
caaaccctacggtctcaggccccaatgtttagagcagacacaactcaccttcacccccag
caccggcgactcctgcatcagcgacagcagcagagccggaatcagcatcggagcctcaat
ggtgctggagacagaggaagtcaccgatgcagtcagcaggatcacctccggaaggacccc
tacgccaacctcatgttgcagcgggaaaaggattgggtctctaaaatccagatgatgcag
ctgcagagcactgacccctacctggatgatttttattaccagaattactttgagaaactg
gagaaactgtcagctgctgaagaaatgcaaggtgatggccctaaaaaggagcgcaccaag
ctcatcaccccgcaggtggccaagctggagcaggcctacaagccagtgcagtttgagggc
tcactgggaaagctcactgtctccagtgtgaataaccctcgaaaaatgatcgatgcggtg
gtgccgtcgcggggtgaggacgatgagacaaaagaaaaacaagttcgagacaagagaaga
aaaacacttgtcataattgagaaaacctacagcttgctcctggacgtggaggactacgaa
cggcgttacctcctgagcctggaagaggaacggcctgccctgctggacgagagaaagcac
aaagtctgtggcatgtacgacaacttgcgggccaagctgcccgggcaagacaggccgagt
gacgaccacttcgtgcagatcatgtgcatccggaaagggaagagaatggtcgcccgcatc
ctccccttcctctccacagagcaggcagctgacattctcctgacgactgctaggaacctc
cctttccttatcaagaaggactcccaagatgaggtcctgccgtgcttactgcgtcccttc
tccgtgctcctctatcaccttccaccggtgacggtcacaggcctcctgcagcagctgatg
aacctacctcagagtgcagccgcgccagcgccctgcaatcctcacctcaccgctgtgctc
cagaacaagttcggcctctcgctgctcttcaccctcctgagccgagttgaagatctgcag
agctcggagcctctgacagagtcctcgcagagtgcccagtggacagaggtgatgtttatg
gccacccgagaacttctacggattccccaagcagccttggccaagcccgtctctataccc
acaaacctagtgtcccttttttctcgctacgttgaccagcagaaactgaacttgctggag
acaaagctgcagctggttcaggggatccgatga
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