Heterocephalus glaber (naked mole-rat): 101709728
Help
Entry
101709728 CDS
T02812
Symbol
Ddx42
Name
(RefSeq) DEAD-box helicase 42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
hgl
Heterocephalus glaber (naked mole-rat)
Pathway
hgl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hgl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101709728 (Ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hgl03041
]
101709728 (Ddx42)
Enzymes [BR:
hgl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101709728 (Ddx42)
Spliceosome [BR:
hgl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
101709728 (Ddx42)
Complex B
101709728 (Ddx42)
Complex C
U2 SnRNP specific factors
101709728 (Ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
101709728
NCBI-ProteinID:
XP_004868683
UniProt:
A0A0P6JML8
LinkDB
All DBs
Position
Un
AA seq
934 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSGNVDLPYIPAENSPTRQQFHSKPADSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNIKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSAAGPSGWTSAGSLNSVPTNSAQQGHNSPDSPIGSAAKSILGFGNAGNISSAPVTY
PSVGTQGANNTASGNNTRDGIGGGNGKRERYTENRGGSRHSHGESGNRHGDSPRHGDGGR
HGDGYRYPESTSRHTDGHRHGENRHGGSTGRHGESRGTNDGRNGESKKEGCNRESKMDPK
VDSKMDKMDSKTDKTADGFAVPEPPKRKKSRWDS
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggccctggcactaaacggggatttggttttggaggttttgcc
atcagtgctgggaagaaagaagaacctaaactcccacaacaatcccatagtgcctttggg
gcaactagttcttcttctggatttggaaagtcagctccaccacagcttccttctttctac
aaaattggatctaaaagggccaactttgatgaagaaaatgcatattttgaagatgaggaa
gaagactctggtaatgttgatttgccttacattcctgctgaaaactcacctacacgtcag
caattccattctaagccagcagattctgacagtgatgatgatcccttggaggcatttatg
gctgaagtagaggatcaggcagctagagacatgaagaggctcgaagaaaaggacaaggaa
agaaaaaacataaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgatacatggcagaaaacccaactgctggcgtggttcaggaggaggaagaagacaat
ctggaatacgatagtgatggaaatccaattgcaccctccaaaaaaataattgatcctctt
cctcccattgatcattcagagattgactacccaccatttgaaaaaaatttttacaatgaa
catgaggagataaccaacctcacaccacaacagttaatagatcttcggcataagctcaat
cttcgggtctctggtgctgcacctcctagaccaggaagtagttttgctcattttgggttt
gatgaacaacttatgcaccagattcggaaatctgaatacacacagcccactccaatacag
tgccagggtgtacctgtggccttaagtggtagagacatgattggtattgctaaaactggc
agtggaaaaactgcagcttttatctggcccatgttgattcatataatggaccagaaggaa
ttggagccaggtgatggaccaattgcagtgattgtgtgtcctacaagggagctttgccag
cagatccatgctgaatgtaagcggtttgggaaagcatataatcttcgatcagtggctgta
tatggaggagggagcatgtgggagcaggccaaggcccttcaggaaggggcagagattgtt
gtgtgtaccccaggtcgactgattgatcatgtgaagaagaaagctactaatcttcaaaga
gtctcttaccttgtgtttgatgaagcagatcgaatgtttgacatgggatttgagtaccag
gttcgatccatagcaagtcatgtccgtcctgacagacaaactctcttattcagtgcaact
tttcggaaaaagattgaaaaattggccagagacatcctgattgaccctattcgagtggtg
cagggagatattggagaggcaaatgaagatgtgacacagattgtggagattctccattct
gggcccagtaaatggaactggcttacccggcgtctggtagagtttacttcttcagggagc
gtcctcctgtttgttactaaaaaagccaatgctgaagagctagccaataacctcaagcag
gagggtcataatcttgggctgctccatggagacatggaccagagtgagagaaacaaagtc
atttcagactttaagaaaaaggacatcccagtcctggtggccactgatgttgctgcccgt
ggtctggacattccttcaattaagactgtcattaactatgatgtggcacgagacattgat
acccatacgcataggattggccgcacaggaagagctggtgagaagggtgtggcctatacc
ttactgacccccaaagacagcaattttgctggtgaccttgtccggaacttggaaggagcc
aaccaacatgtttccaaggaactcttagatcttgcaatgcagaatgcctggtttcggaaa
tcccgcttcaaaggagggaaaggcaaaaagctgaacattggtggaggaggcctgggctat
agggaacggcctggcctaggctctgagaacacggatcgaggaaataataacaatgtgatg
agtaattatgaggcctacaagccctccacaggagccatgggagatcgcctgacagcaatg
aaagcagcttttcagtcacagtataagagtcattttgttgcagccagtttaagtaatcaa
aaggctggaagctctgctgctgggccaagtggatggactagtgcaggaagcttgaattct
gttccaactaattcagcacagcagggccataacagtcctgacagccctattggcagtgct
gccaagagcatcctgggctttggcaatgctgggaatatcagcagtgctccggtgacatac
ccttctgttggcacccagggagccaacaacacagcttcgggaaataacacccgagatggg
attgggggtggcaatgggaaaagagagagatatactgaaaaccggggtggcagtcgtcac
agtcatggagagagtggcaatcggcatggtgatagcccacgtcatggagatggtggtcgc
catggagatggataccgctacccagaaagcaccagccgtcatactgatggccatcggcat
ggggagaacaggcatggaggaagtacaggccggcatggggagagccggggtacaaatgat
ggtcggaatggagaaagcaagaaagaaggatgtaatcgtgaaagcaagatggaccccaag
gtggacagcaagatggacaagatggacagcaagacagataagacagctgatggttttgct
gtcccggagccacccaaacgcaagaagagtcgatgggacagttag
DBGET
integrated database retrieval system
