Heterocephalus glaber (naked mole-rat): 101715275
Help
Entry
101715275 CDS
T02812
Symbol
Parn
Name
(RefSeq) poly(A)-specific ribonuclease
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
hgl
Heterocephalus glaber (naked mole-rat)
Pathway
hgl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hgl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101715275 (Parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hgl03019
]
101715275 (Parn)
Enzymes [BR:
hgl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
101715275 (Parn)
Messenger RNA biogenesis [BR:
hgl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101715275 (Parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
CppA_C
RRM_1
T6PP_C
NCBP3
Motif
Other DBs
NCBI-GeneID:
101715275
NCBI-ProteinID:
XP_004855897
UniProt:
A0A0P6JER7
LinkDB
All DBs
Position
Un
AA seq
637 aa
AA seq
DB search
MEIIRNNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDYTDSKYIMKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQG
FDFNKVFCKGIPYLNQEEERQLREQYDEKRSQANGAGALAYVSPNTSKCPVTIPEDQKKF
IDQVVEKIEDLLQSEENKTLDLEPCTGFQRKLIYQTLSWKYPRGVHIETLETEKKERYVV
ISKVNEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQF
YCPLPADLKEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANHLGSFLSPPKLHVSSRSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKSSDLYQLFSAFGNIQISWIDDTS
AFVSLSQPEQVPIAVNTSRYAESYRIQTYADYVGKKQGDKQIKRKWTDDSWKEVDRKRLN
TQSLSHSLQSHYYPPDSFTATSTVKKRNLSPSPEAGSEDRVLGKSSDSDLEQADSCAEAL
SEGRKKSKKLKRMKKELTPAGSVRLSPAKLFEVPDTW
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atggagataattaggaacaattttaagagtaaccttcataaagtgtaccaggccatagag
gaggccgacttcttcgccatcgatggggagttttcaggaatcagtgatggaccatcagtc
agtgccctgacaaatggttttgacactccagaagagaggtatcagaagcttaagaagcat
tccatggactttttgctgtttcagtttggcctttgcacttttaagtatgactacacagat
tcaaagtatatcatgaagtcatttaacttctatgttttcccgaaacccttcaatagatcc
tcacctgatgtcaaatttgtttgtcagagctccagtatcgacttcctagcaagccaggga
tttgatttcaataaagttttttgcaaaggaattccatatttaaatcaggaagaggaaaga
cagttgagagagcagtatgatgaaaaacgttctcaggccaatggtgcaggagctctggcg
tatgtgtctcctaacacttcaaaatgtcctgtgacaattcctgaggatcagaagaagttt
attgaccaagtagtagagaaaatagaagatttattacaaagtgaagaaaacaagaccttg
gatttagagccatgtaccgggtttcaaagaaaattaatttatcagactttgagctggaag
tatcccagaggcgttcacattgagactttagaaactgaaaagaaggagcgatatgtagtt
atcagcaaagtaaatgaagaagaacgcaagagaagagagcaacagaaacatgctaaagaa
caggaggaactaaatgatgctgtaggattttcaagagtcattcatgccattgccaattcg
ggaaaactcgttgttggacacaatatgctcttggatgtcatgcacacaattcatcagttc
tactgccctctgcctgcggacttgaaagagtttaaagagatgacaacatgtgtcttcccc
agactcttggatactaaattgatggccagcacacaaccatttaaggatatcattaacaac
acatcccttgcagaattggaaaagcggttaaaagagacacctttcaaccctcctaaagtt
gaaagtgcagaaggttttccaagttatgacacagcttccgaacagctccacgaggcaggc
tatgacgcttatatcacaggactgtgcttcatctccatggcaaatcacctaggttctttt
ctcagtcctccaaaacttcatgtgtcttccagatcaaaactcattgaacctttttttaac
aagttatttcttatgagggtcatggacatcccctatctaaacttggaagggccagacttg
caacctaaacgcgatcatgttcttcatgtaacgttccccaaagagtggaaaagcagtgac
ctttaccagctattcagtgcctttggtaacattcagatatcctggatcgatgacacatcc
gcatttgtgtctctcagccagcctgaacaagtcccaattgctgtcaataccagcagatat
gcagaaagctatcggatccagacctatgctgactatgtggggaaaaaacagggagacaag
cagatcaagagaaaatggacagatgacagctggaaggaagtagacagaaagcggctgaac
acacagagcttgtctcactcgcttcagagccactactaccctcccgacagctttacagcc
accagcacagtcaaaaagagaaatctgagccccagtccagaagctggctcagaagacaga
gtattggggaagagttctgactcggaccttgagcaggcggattcctgtgcagaagccctc
tcagagggaaggaaaaagtccaagaaattaaaaagaatgaagaaagagcttactccagca
ggaagcgtcaggctcagccctgccaagctcttcgaagttcccgacacatggtaa
DBGET
integrated database retrieval system
