Heterocephalus glaber (naked mole-rat): 101717628
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Entry
101717628 CDS
T02812
Symbol
Rtcb
Name
(RefSeq) RNA 2',3'-cyclic phosphate and 5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hgl
Heterocephalus glaber (naked mole-rat)
Brite
KEGG Orthology (KO) [BR:
hgl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hgl03016
]
101717628 (Rtcb)
Enzymes [BR:
hgl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
101717628 (Rtcb)
Transfer RNA biogenesis [BR:
hgl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
101717628 (Rtcb)
Prokaryotic type
tRNA splicing ligases
101717628 (Rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
101717628
NCBI-ProteinID:
XP_004844844
UniProt:
G5BPE1
LinkDB
All DBs
Position
Un
AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLEKINKNCWRIKKAFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagttacaacgatgagctgcaattcctggaaaagatcaacaagaactgctgg
aggatcaagaaggccttcgtgcctaatatgcaggttgaaggggttttctatgtgaatgat
gctctagaaaaattaatgtttgaggaattaaggaatgcctgtcgaggaggtggtgttggt
ggcttcctgccagccatgaagcagattggtaatgtggcagccctgcctgggattgttcat
cgatccattgggctccctgatgtccactcaggctatgggtttgccattgggaatatggca
gcctttgatatgaatgacccggaagcagtggtgtccccaggtggtgtcgggtttgacatc
aactgcggtgtccgcctgctgagaaccaacttggatgaaagtgatgtccaacccgtgaag
gaacaactggcccaagcgatgtttgaccacattcctgttggcgtggggtccaaaggggtc
attccgatgaatgccaaagacctggaggaggccttggagatgggtgtggactggtccctg
agagaaggctatgcctgggccgaggataaggagcactgtgaggagtacgggaggatgctg
caggctgaccccaacaaggtctcagcgagggccaaaaagagaggccttcctcagttgggg
accctgggtgcaggcaaccactatgcagaaatccaggttgtggacgagatcttcaatgaa
tatgctgcaaagaaaatgggcatcgaccacaaggggcaggtgtgcgtgatgatccacagc
ggcagccggggcctgggccaccaggtcgccacagatgccctggtggccatggaaaaggcc
atgaaaagagacaagatcatagtcaatgaccggcagttggcttgtgctcggattgcctcc
ccagagggccaggactacctaaagggaatggcggctgctggcaactacgcctgggtcaac
cgctcatccatgaccttcctaacccgccaggcttttgccaaggtcttcaacacaacccca
gacgacctggacctgcatgtgatctacgacgtttcccacaacattgccaaagtggagcag
cacgtggtggacgggaaggagcggacactgctggtgcataggaaggggtccactcgcgct
ttccctcctcaccacccactcatcgctgtggactaccagctcactggacagccggtgctc
attggcggcaccatgggaacctgcagttacgttctcactggcactgaacaggggatgacg
gagacctttgggaccacgtgtcacggcgcgggccgtgcgttgtcccgagcaaaatctcgc
cgtaatttagatttccaggatgtcttggacaaattggcagatatgggaattgcaatccgg
gttgcctcaccaaaactagttatggaagaggctcccgagtcctataagaatgtgaccgac
gtggtgaacacctgccatgatgctggaatcagcaagaaggccattaaactgaggccgatc
gccgtcattaaagggtag
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