Heterocephalus glaber (naked mole-rat): 101718799
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Entry
101718799 CDS
T02812
Symbol
Prpf40a
Name
(RefSeq) pre-mRNA processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
hgl
Heterocephalus glaber (naked mole-rat)
Pathway
hgl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hgl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101718799 (Prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hgl03041
]
101718799 (Prpf40a)
Spliceosome [BR:
hgl03041
]
Complex A
U1 snRNP components
U1 related factors
101718799 (Prpf40a)
Complex B
101718799 (Prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
101718799
NCBI-ProteinID:
XP_004870064
UniProt:
A0AAX6QBS6
LinkDB
All DBs
Position
Un
AA seq
927 aa
AA seq
DB search
MCSGSGRRRSSLSPTMRPGTGAERGGLMMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQ
MMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQASMQPTLPPGVNSMDVAAGTASGAKSMWT
EHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKES
RWAKPKELEDLEGYQNTIVAGGLITKSNLHAMIKAEESSKQEDCSTSTAPVPTTEIPTTM
TTMAAAEAAAAVVAAAAAAAAAAAAANASASTSTTNTVGTVPVVPEPEVTSIVATVVDNE
STVTISTEEQAQLTNTTAIQDLSVEVSNNAEETSKQETVADFTPKKEEEESQPAKKTYTW
NTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEK
EEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYED
VLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQ
NMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSM
SSWMKLYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVV
EVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAF
KSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSK
NKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSK
KHKKKSKKRRHKSDSPESDAEREKDKKEKDRENEKDRTRQRSESKHKSPKKKTGKDSGNW
DTSGSELSEGELEKRRRTLLEQLDDDQ
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgtgtagcggcagtggccgccggcgaagcagtctgagccctacgatgaggccggggact
ggagccgagcgtggaggcctcatgatggggcaccctggcatgcattatgcaccaatggga
atgcaccctatgggtcagagagcaaatatgcctcctgtacctcatggaatgatgcctcaa
atgatgccccctatgggagggccaccaatgggacaaatgcctggaatgatgtcttcagta
atgcctgggatgatgatgtctcatatgtctcaggcttccatgcaacctaccttaccgcca
ggggtaaatagtatggatgtagcagcaggtacagcatctggtgcaaaatcaatgtggact
gaacataaatcacctgatggaaggacttattactacaatactgaaacaaaacagtccacc
tgggagaaaccagatgatcttaaaacacctgctgagcaactgttatctaaatgcccttgg
aaggaatataaatctgactctggaaagccttactattataattctcaaactaaagaatcc
cgctgggccaaacctaaagaactcgaggatcttgaaggataccagaataccattgttgct
ggaggtcttattacaaaatcaaacctgcatgccatgatcaaagctgaagaaagcagcaaa
caagaagattgcagcacatcaacagccccagttcctacaacagaaattcctaccactatg
accaccatggctgctgcagaagcagcagctgctgtggttgcagctgcagctgcagctgca
gcagctgctgcagcagccaatgccagtgcttccacttctactactaatactgtcggaact
gttccagttgttcctgagcctgaagttacttccattgtggctaccgttgtagataatgaa
agtacagtaactatatcaactgaagaacaagcacagcttactaataccactgctattcag
gatctaagtgttgaagtatctaataatgcagaagaaacatcaaagcaggaaactgtagct
gattttactccaaaaaaagaagaggaagagagccaaccagcaaaaaaaacatatacttgg
aatacaaaggaagaggcaaagcaggcattcaaagaattattgaaagaaaagcgggtacct
tccaatgcttcatgggagcaagctatgaaaatgatcattaatgatccacgatacagtgct
ttagcaaagttgagtgagaaaaagcaggcctttaatgcctataaagtccagacagagaaa
gaagaaaaagaagaagcaagatcaaaatataaagaagctaaggaatcctttcagcgtttt
cttgaaaatcatgagaaaatgacttctacaaccagatataaaaaagcagagcaaatgttt
ggagagatggaagtctggaatgcaatatcagaacgtgatcgtctggaaatctatgaagat
gttttattctttctgtcaaaaaaagaaaaggagcaagcaaagcagttgcgaaagagaaat
tgggaagccttaaaaaatatacttgataatatggctaacgtaacatactctactacttgg
tctgaggcccagcagtatctgatggataatccaacttttgcagaagatgaggagttacag
aacatggacaaagaagatgcattaatttgctttgaagagcacattcgggctttagaaaag
gaagaggaagaagaaaaacagaagagtttgctgagagaaaggagacggcagcgtaaaaat
agagaatcttttcagatatttttagatgaactgcatgaacatggacaactacattctatg
tcatcttggatgaaattgtatccaaccattagttctgacattagattcactaatatgctt
ggtcagcctggatcaactgcacttgatcttttcaagttttatgttgaggatcttaaagca
cgttatcatgatgaaaaaaaaataataaaagacattctaaaggataaaggatttgtagtt
gaagtaaatactacatttgaagattttgtggcaataattagttcaactaaaagatcaact
accttggatgctggaaatatcaagttggctttcaatagtttactggaaaaggcagaagcc
cgtgaacgtgaaagagaaaaagaagaggctcggaaaatgaaacgaaaagaatctgcattt
aagagcatgttgaaacaagctgctcctccaatagaattggatgccgtctgggaagatatc
cgggagagatttgtaaaagagccagcatttgaggacataactctagagtctgaaagaaaa
agaatatttaaagattttatgcatgtccttgagcatgagtgtcagcatcatcattcaaag
aataagaaacattctaagaaatctaagaaacatcatagaaaacgttcccgctctcgatcg
gggtcagattcagatgatgatgacagccattcaaagaaaaaaagacagcgatcagagtcc
cgttctgcttcagaacattcttctagtgctgaatctgagagaagttataaaaaatcaaaa
aagcataagaagaaaagcaagaagaggagacataaatctgactctccagaatcagatgct
gagcgagaaaaggataaaaaagaaaaagatcgggaaaatgaaaaggatagaactagacag
agatcagaatcaaaacacaaatcacctaagaaaaagactgggaaggattctggtaattgg
gatacttctggcagtgaactgagtgaaggggaattagaaaagcggagaagaacccttttg
gaacaactggacgatgatcaataa
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