Heterocephalus glaber (naked mole-rat): 101720314
Help
Entry
101720314 CDS
T02812
Symbol
Lsm5
Name
(RefSeq) LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
hgl
Heterocephalus glaber (naked mole-rat)
Pathway
hgl03018
RNA degradation
hgl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hgl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101720314 (Lsm5)
09123 Folding, sorting and degradation
03018 RNA degradation
101720314 (Lsm5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hgl03019
]
101720314 (Lsm5)
03041 Spliceosome [BR:
hgl03041
]
101720314 (Lsm5)
Messenger RNA biogenesis [BR:
hgl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101720314 (Lsm5)
mRNA degradation factors
5'-3' decay
Lsm complex
101720314 (Lsm5)
Spliceosome [BR:
hgl03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
101720314 (Lsm5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
Motif
Other DBs
NCBI-GeneID:
101720314
NCBI-ProteinID:
XP_004872266
UniProt:
A0A0P6K6S3
LinkDB
All DBs
Position
Un
AA seq
91 aa
AA seq
DB search
MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLVPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaacgcgaccaccaacccgtctcagctgctgccgctagaactcgtggacaag
tgtataggatcaagaattcacattgtgatgaaaagtgataaggaaattgttggcactctt
ctaggatttgatgactttgtcaatatggtgctggaagatgtcactgagtttgagatcaca
ccagaaggaagaaggattactaaattagatcagatcttgctaaatggaaataatataacc
atgctggttcctggaggagaaggacccgaagtatga
DBGET
integrated database retrieval system
