Heterocephalus glaber (naked mole-rat): 101720806
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Entry
101720806 CDS
T02812
Symbol
Lsm4
Name
(RefSeq) LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
hgl
Heterocephalus glaber (naked mole-rat)
Pathway
hgl03018
RNA degradation
hgl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hgl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101720806 (Lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
101720806 (Lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hgl03019
]
101720806 (Lsm4)
03041 Spliceosome [BR:
hgl03041
]
101720806 (Lsm4)
Messenger RNA biogenesis [BR:
hgl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101720806 (Lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
101720806 (Lsm4)
Spliceosome [BR:
hgl03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
101720806 (Lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
101720806
NCBI-ProteinID:
XP_004873402
UniProt:
A0A0P6JG68
LinkDB
All DBs
Position
Un
AA seq
139 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQRGRGMGSAGRGVFGGRGRGSI
TGTGRGQPEKKPGRQAGKQ
NT seq
420 nt
NT seq
+upstream
nt +downstream
nt
atgttgcccctgtcactgctgaagactgcgcagaaccaccccatgttggtggagctcaag
aacggagagacgtacaacgggcacctggtgagctgtgacaactggatgaacatcaacctg
cgtgaggtcatctgcacgtcccgggacggggacaagttctggcgcatgccggagtgctac
atccgcggcagcaccatcaagtacctgcgcatccccgacgagatcatcgacatggtcaag
gaggaggtggtggccaagggccgcgggcgcggcgggctgcagcagcagaagcagcagcga
ggccgaggcatgggcagcgccgggcgaggtgtgtttggcggccggggccgcggcagcatc
acgggcacgggccggggacagcccgagaaaaagccaggcagacaggcgggcaagcagtga
DBGET
integrated database retrieval system
