Heterocephalus glaber (naked mole-rat): 101724541
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Entry
101724541 CDS
T02812
Symbol
Skiv2l2
Name
(RefSeq) Ski2 like RNA helicase 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
hgl
Heterocephalus glaber (naked mole-rat)
Pathway
hgl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hgl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101724541 (Skiv2l2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hgl03019
]
101724541 (Skiv2l2)
03041 Spliceosome [BR:
hgl03041
]
101724541 (Skiv2l2)
03009 Ribosome biogenesis [BR:
hgl03009
]
101724541 (Skiv2l2)
03016 Transfer RNA biogenesis [BR:
hgl03016
]
101724541 (Skiv2l2)
Enzymes [BR:
hgl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101724541 (Skiv2l2)
Messenger RNA biogenesis [BR:
hgl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
101724541 (Skiv2l2)
Spliceosome [BR:
hgl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101724541 (Skiv2l2)
Complex C
U4/U6.U5 tri-SnRNP related factors
101724541 (Skiv2l2)
Ribosome biogenesis [BR:
hgl03009
]
Eukaryotic type
Pre-60S particles
Helicases
101724541 (Skiv2l2)
Transfer RNA biogenesis [BR:
hgl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
101724541 (Skiv2l2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
101724541
NCBI-ProteinID:
XP_004848571
UniProt:
G5C6W9
LinkDB
All DBs
Position
Un
AA seq
1040 aa
AA seq
DB search
MAAAFGDELFSVFEDDSTTEAGPKKDKEKGKWKGLPGSADKAGKHSDGKLPSELTNSGKN
KRNTDFEGTDEPIFGKKPRIEESVTEDLSLADLMPRVKVQSVETVEGCTHEVALPADEDY
LPLKPRIGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREK
QRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEV
MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQ
PCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQK
GRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEE
VFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT
ETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEK
MSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVV
EKVKNSEQQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKV
KNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKPDE
KGEMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDD
MGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKRA
RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSA
EQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSF
KPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENK
FAEGITKIKRDIVFAASLYL
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgcttttggtgatgagctgttcagcgtgttcgaggacgactcaactactgaa
gccggacccaagaaagacaaagagaaggggaaatggaaaggacttccagggtctgcagac
aaggccgggaaacattctgatggtaaattaccatcagagttaactaatagtggaaaaaac
aagagaaatacagattttgaaggcacagatgaacccatttttggaaagaagcccaggata
gaagagtcagtaactgaagacctaagtttggcagatctgatgcccagggtcaaggtacag
tccgttgaaactgttgaaggatgtacacatgaggttgcgcttcctgcagatgaagattat
ttaccacttaaacctcgaattggaaaagcagcaaaggaatacccatttatacttgatgct
ttccaaagagaagccattcagtgtgttgataataatcagtctgttttagtatctgcacat
acatcagcgggaaaaactgtatgtgctgagtatgccattgcattggctctaagggaaaaa
cagcgtgtaatatttaccagcccaattaaggctctcagtaatcaaaaataccgtgaaatg
tatgaggaatttcaagatgttggtctgatgactggagatgttaccattaatcctacagca
tcttgtctagttatgactacagagattttgagaagtatgctgtacagaggctctgaagtt
atgcgagaagttgcttgggtcatttttgatgaaattcattacatgagagattcagagcgt
ggtgtggtatgggaagaaactattattttgcttcctgataatgttcactacgtctttctt
tcggctactattccaaatgcccgacagtttgctgaatggatttgtcatttacataaacag
ccttgtcacgtaatttacacagattatcggcccactccattgcagcactacattttccca
gcagggggagatggccttcaccttgtggttgatgaaaatggtgatttcagagaagataat
tttaatactgccatgcaagtgcttcgagatgcaggagatttggcaaaaggagaccagaag
gggcggaaaggaggaacaaaaggaccatcaaatgtgttcaagattgtgaagatgattatg
gaaagaaattttcaacccgtaattattttcagttttagtaagaaagattgtgaagcttat
gctcttcagatgaccaaattagatttcaacacagatgaagaaaagaagatggttgaagaa
gtattcagtaatgcaattgactgcttgtctgatgaagataaaaagctccctcaggttgaa
catgtacttcctcttttgaagcgagggattggtattcaccatggtggattacttcctatt
ttgaaagaaactatagaaattcttttttctgaaggattaataaaggccttatttgcaaca
gagacttttgctatgggaattaacatgccagctagaactgttttatttacaaatgcccgc
aaatttgatgggaaagattttcgatggatttcctctggtgagtacattcagatgtctggt
cgtgctggaagaagaggaatggacgacagagggattgtaattcttatggtagatgagaag
atgagcccaacaattggaaaacagctacttaagggctcagctgatcctctcaatagtgct
ttccatttaacctacaacatggttttgaatttactacgtgttgaagaaattaaccctgag
tatatgctagaaaaatctttctaccagtttcaacattatagagccattccaggagtagta
gagaaggttaagaactcagaacaacagtataataaaatagtaattcccaatgaagaaagt
gtagtcatctattacaagattagacaacagcttgccaaattgggtaaagaaattgaagaa
tatattcataaacccaaatactgcttaccatttctacaaccaggtcgtttggtaaaggta
aaaaatgaaggagatgactttggctggggagtagtagtgaatttctcaaaaaagtcaaat
gttaagcctaattctggtgaactggatcctttgtatgtcgtagaagtacttttacgctgt
agcaaagagagcttgaaaaattcagctacagaggctgcaaaaccagctaaacctgatgaa
aaaggagagatgcaggttgttccagttttggtgcatctcttgtctgctatcagtagtgtt
agactttacattcctaaagaccttcggccattggacaataggcagagtgttttaaagtca
atacaggaagttcagaaacgttttcctgatggtgttcccttattagatccgattgatgat
atgggcattcaagatcaaggactgaaaaaagtcattcagaaagtagaggcttttgagcat
cgaatgtattctcatccacttcacaatgatccaaatttggaaactgtgtatacactttgt
gaaaaaaaagcacagattgcaatagatattaagtctgcaaagcgagaactgaagagagca
agaactgttttacaaatggatgagcttaaatgtcgcaaacgtgttttaagaaggttggga
tttgctacttcttctgatgttatagaaatgaaaggacgagtggcttgtgagataagcagc
gctgatgagctccttctaactgagatgatgtttaatggccttttcaatgacctttctgca
gaacaagcaacagcattattgagttgttttgtgtttcaagagaattctagtgagatgccc
aaattaacagaacagttagcaggaccacttcgtcaaatgcaggaatgtgctaaaagaatt
gcaaaagtttcagcagaagcaaaattggaaattgatgaggaaacttatctaagctcattc
aaacctcacttaatggatgtggtatatacctgggcaacaggagctacatttgcccatatc
tgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctagaagaa
ttgcttcgacaaatgtgtcaggctgcaaaagccattggaaacactgagctggaaaataaa
tttgctgaaggaatcaccaaaatcaagagagatattgtgtttgctgcaagcctgtactta
taa
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