Hylemonella gracilis: DW355_04895
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Entry
DW355_04895 CDS
T09883
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hgr
Hylemonella gracilis
Pathway
hgr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hgr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DW355_04895 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hgr03021
]
DW355_04895 (rpoB)
03400 DNA repair and recombination proteins [BR:
hgr03400
]
DW355_04895 (rpoB)
Enzymes [BR:
hgr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DW355_04895 (rpoB)
Transcription machinery [BR:
hgr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DW355_04895 (rpoB)
DNA repair and recombination proteins [BR:
hgr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DW355_04895 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
DUF5887
Motif
Other DBs
NCBI-ProteinID:
QBK04203
UniProt:
A0A4P6UH38
LinkDB
All DBs
Position
1020215..1024327
Genome browser
AA seq
1370 aa
AA seq
DB search
MAYTYTERKRIRKSFGSRDSVLEIPYLLQMQKDAYTSFLQADLSSTKRKPEGLQAAFEAA
FPIVSHNGFVEMKFLEYSLAKPAFDVRECQTRGLTFASAVRARVQLIIYDRESSTSQNKV
VKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFS
ARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPETILANFFVNDNFRLQ
DSGAQMEFVADRLRGEVARFDITDKSGKVIIAKDKRITARHTRELEQSGTTHISVPEDFL
VGRVVARNIVDPDTGEIIAKANEELTEALLKKLRTANVQELQCIYTNELDQGAYISQTLR
SDETTDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAKLGNS
DPAGPMVLTNEDILAVVKILVDLRNGRGEVDDIDHLGNRRVRCVGELAENQYRTGLARIE
KAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKRRVSA
LGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETPYR
RVEDGKVTTKIDYLSAIEEGKYVIAQANATLDKDGKLTDELVSAREKGESILCGADRIQY
MDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPLVGTGIERVAAIDS
GTVVTATRGGVVDSVDATRIVIRVNDNEAVAGEVGVDIYNLIKYQRSNQNTNIHQRPIVK
KGDKLAKGDVIADGASTDLGEIAIGQNMLIAFMPWNGYNFEDSILISERVVADDRYTSIH
IEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVVPGDVLVGKVTPKGE
TTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGIQRDKRAQQIIDDE
LKRFRLDLNDQLRIVEADAFDRIEKLLNGKVANGGPQKLAKGSKIDKAYLTSVEKHHWFD
IRPADDEVASQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRR
LQPGDKMAGRHGNKGVVSKITPVEDMPYMADGTPVDIVLNPLGVPSRMNIGQVLEVHLGW
AGKGLGQRIGDMLQREAATTEIRGFLEQVYNGAGRKEELAKLKDDELRLMAQELTSGVPF
ASPVFDGATEDEIRGMLKLAYPDDVAQTKGLNETRTQAQLYDGRTGDAFERTTTVGYMHY
LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLT
VKSDDVQGRTKVYENIVKGEHAIEAGMPESFNVLVKEIRSLGLDIELERS
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atggcctacacctataccgaacgcaagcgcatccgcaagagcttcggcagccgcgacagc
gtgctggaaattccttacctcctgcagatgcagaaggacgcctacacgagcttcctgcag
gcggatctgtcctccaccaagcgcaagccagagggcctgcaggccgcttttgaggcggcc
ttccccatcgtctcgcacaacggttttgtcgagatgaagttcctcgaatacagcctggcc
aagccggccttcgatgtgcgcgagtgccagacccgtggcctgaccttcgcttccgccgta
cgtgcgcgcgtgcagctcatcatctatgatcgcgagtcctcgacgtcgcagaacaaggtg
gtcaaggaagtcaaggaacaagaggtctacatgggcgaagtgccactcatgaccgacaag
ggttccttcatcatcaacggcactgagcgcgtgatcgtctcgcagctgcaccggtcgccg
ggcgtgttcttcgagcatgacaagggcaagacgcacagctcgggcaagctgctgttctcg
gctcgcatcattccctaccgcggctcctggctggacttcgagttcgaccccaaggacatt
ctttacttccgcgtggaccgtcgccgcaagatgccggtcacgatcctgctcaaggccatc
ggcctgaatccggaaaccatcctcgccaacttcttcgtcaacgacaacttccgcctgcag
gacagcggcgcgcagatggagttcgtggccgaccgcctgcgcggtgaagtggcgcgcttc
gacatcaccgacaagtcgggcaaagtgatcatcgccaaggacaagcgcatcaccgcgcgc
cacacgcgcgagttggagcagtccggcaccacccacatcagcgtgccggaagactttctg
gtcggtcgcgtggtcgcgcgcaacatcgtcgaccccgacacgggcgagatcattgccaag
gccaacgaagagctgaccgaggccttgctcaagaagctgcgcaccgccaacgtgcaggag
ctgcagtgcatctacacgaatgagctggaccagggcgcttacatcagccagaccctgcgc
agcgatgaaacgacggacgagttcgccgcgcgcgtggccatctaccgcatgatgcgcccc
ggcgagccgcccacggaagacgccgtgcaggccctgttccagcgtctgttctacaacccg
gacacctacgacctgtcgcgcgtgggtcgcatgaagttcaatgccaagctgggcaattcg
gaccccgcgggccccatggtcctgaccaacgaggacatcctggccgtggtcaagatcctc
gtggacctgcgcaatggccgcggcgaagtcgatgacatcgaccacctgggtaaccgccgc
gtgcgttgcgtcggtgaactggccgagaaccagtaccgcaccggtctggcgcgtatcgag
aaggccgtgaaggaacgtctgggccaggctgaacaagagccgctgatgccgcacgacctg
atcaactccaagccgatttccgcggcgctcaaggagttcttcggtgcgtcccagctctcg
cagttcatggaccagaccaacccgctggccgaaatcacgcacaagcgtcgcgtctcggcc
ctgggcccgggcggactgacccgcgagcgcgccggcttcgaagtgcgcgacgtgcacgtc
acgcactacggccgcgtctgcccgatcgaaacgccggaaggcccgaacatcggcctgatc
aactccctggccctgtacgcccgcctgaacgaatacggcttcatcgagacgccgtaccgt
cgcgtggaagacggcaaggtcacgaccaagatcgactacctcagcgccatcgaggaaggc
aagtacgtcatcgcccaggccaacgccacgctggacaaggacggcaagctgaccgacgag
ttggtgtccgcccgcgagaagggtgaatccatcctctgcggcgctgaccgcatccagtac
atggatgtgtcgccggcgcagatcgtctccgtggcggcttcgctggttcccttccttgag
cacgacgacgcgaaccgcgccttgatgggcgcgaacatgtcgcgtcaggccgtgcccgtg
ctgcgtccggaaaagccgctggtcggcaccggcatcgagcgcgtggccgccatcgactcc
ggcaccgttgtgacggcgacgcgcggcggcgtggtcgactcggtcgatgccacccgcatc
gtgatccgcgtcaacgacaacgaagccgtggccggtgaagtgggcgtggacatctacaac
ctcatcaagtaccagcgttccaaccagaataccaacatccaccagcgtcccatcgtcaag
aagggtgacaagctggccaagggtgacgtgatcgcggacggcgcttcgaccgacctgggt
gaaatcgcgatcggccagaacatgctgatcgccttcatgccctggaacggctacaacttc
gaggactcgatcctgatctcggagcgcgtggtggccgacgaccgctacacctcgatccac
atcgaggaactggtggtcatggcgcgcgacaccaagctgggcgccgaggaaatcacccgc
gacatcccgaacctgagcgaacagcagctcaaccgcctggacgagtccggcatcatctac
gtcggcgccgaagtggtgccgggggacgtgctggtgggcaaggtcacgcccaagggcgag
accacgctgacgccggaagagaagctgctgcgtgccatcttcggcgagaaggccagcgac
gtgaaggacacctcgttgcgcgtggaccagggttcgcaaggcactgtcatcgacgtgcag
gtcttcacccgcgagggcatccagcgcgacaagcgcgctcagcagatcatcgacgatgaa
ctcaagcgtttccgcctggacctgaacgaccagctgcgcatcgtcgaggccgacgccttc
gaccggatcgagaaactgctcaacggcaaggtcgccaacggtggcccgcagaagctggcc
aagggcagcaagatcgacaaggcctacctgacctccgtcgagaagcaccactggttcgac
atccgcccggcggatgacgaggtggcttcgcagctggaatccatcaagaacagcctggag
cagacgcgccacagcttcgacctggccttcgaagagaagcgcaagaagctcacgcagggc
gacgagctgcccgcgggcgtgctcaagatggtcaaggtctacctggccgtcaagcgccga
ctgcagcctggtgacaagatggccggccgtcacggcaacaagggcgtggtctccaagatc
accccggtcgaagacatgccctacatggccgacggtacccccgtggacatcgtgctgaac
ccgctgggcgtgccttcgcgcatgaacatcggccaggtgctcgaagtccatctgggctgg
gccggcaagggcctgggccagcgcatcggcgacatgttgcagcgcgaggccgccacgacc
gagatccgcggcttcctggagcaggtctacaacggtgccggccgcaaggaagagctggcc
aagctgaaggacgatgagctgcgcctgatggcgcaggagctcacgagcggcgtgcctttc
gcatcgccggtgttcgacggcgcgaccgaggacgaaatccgcggcatgctcaagctggcc
tatccggacgacgtggcccagaccaagggcctgaacgagacccgtacccaggctcagctg
tacgacggtcgcaccggcgacgccttcgagcgcacgaccaccgtggggtacatgcactac
ctcaagctgcaccacttggtcgacgacaagatgcacgcccgttccaccggtccgtactca
ctcgtcacccagcagccgctgggcggcaaggcgcagtttggcggccagcgcttcggcgaa
atggaagtgtgggcgctggaagcctacggcgcgtcctacgtgctgcaggaaatgctcacc
gtcaagtccgacgacgtgcagggccgcaccaaggtgtacgagaacatcgtcaagggcgag
cacgccatcgaagccggcatgccggaatcgttcaacgtgctggtcaaggaaatccgttcc
ttgggcctggacatcgaactcgagcgttcctaa
DBGET
integrated database retrieval system
