Hylemonella gracilis: DW355_09195
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Entry
DW355_09195 CDS
T09883
Name
(GenBank) S1 RNA-binding domain-containing protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hgr
Hylemonella gracilis
Pathway
hgr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hgr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DW355_09195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hgr03019
]
DW355_09195
03009 Ribosome biogenesis [BR:
hgr03009
]
DW355_09195
Enzymes [BR:
hgr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DW355_09195
Messenger RNA biogenesis [BR:
hgr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DW355_09195
Ribosome biogenesis [BR:
hgr03009
]
Prokaryotic type
rRNA processing factors
DW355_09195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
QBK04926
UniProt:
A0A4P6UK22
LinkDB
All DBs
Position
complement(1950097..1952967)
Genome browser
AA seq
956 aa
AA seq
DB search
MKRMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRQYFAAGVSPSQAKIQDVIKEGQELLVQVEKEERGNKGAALTSFVS
LAGRYVVLMPNNPRGGGVSRRIEGDDRAELKEALDQLEYPNGMSIIARTAGIGRSAPELQ
WDLNYLLKLWEAIDAASKASKGAFLIYQESSLVIRAIRDYFNSDIGDILIDTDDVYEQAQ
QFMAHVMPEHAARVKRYRDNAPLFSRFQIEHQIESAYARTVTLPSGGAIVIDHTEALVSV
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESRNRREVENR
LRDALRQDRARVQFGTISKFGLMEMSRQRLRPALSEGASIPCPRCGGSGHIRDTESSALQ
ILRIIQEESQKDNTAAVHVQVPVDVASFLLNEKRNEITKIELKQRLNVLMVPNKSLETPN
YKLERLKHDDPRLDRVEASYAMAEEIEDPTAITRRSQEPTNKQTPVLKGFLPDAPPAPLP
TPAAAPKSAAPVAKQAAHKTAKTAGGDTESGFFGWIKRLFGGAETKPAAGRAHGDKKDAR
REGGRDGGRGGRREDSQGRREDTRGEGRQRGGSNTNGGRGRQEQQARGERTERGDGQARN
EARSGGGNEQRQERAPRGGEARGGRQDGRGEQPRSGRGERAERPERAERPERERAERQER
TERPEGGEQPRRERQERPEGGEQPRRERQERPRRGEQEQRAPQEVLEAGQAMDLTAENTG
LVAPGLDEAGQAGSGQNTRERRSRDRYGRDRRERGERNGGQGRGGESQGEPEAADTDGQA
QAMAPAKEAATPGVSSETQTPTASTSANTGGQKLPRVQSYKLPLSTLNEVASAAGLLWVN
SDAEKVATVQAAIAAEPQPVHVPRERPAPVVLDEGPLVLVETRKDLSALKLPFEQQ
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctgatcaacgccacgcaggccgaagagcgccgcttggccatcgtcgac
ggacagaaactcctcgactacgaaatcgaaatcgaagggcgcgagcagcgcaagggcaac
atctacaaggccgtcgtcacccgcgtcgagccttcgcttgaagcctgcttcgtcgattac
ggtgaagaccgccacggcttcctccccttcaaggaaatctcccgccagtacttcgccgcg
ggcgtctcgcccagccaggccaagatccaggacgtgatcaaggaaggccaggaactgctg
gtccaggtcgagaaggaagagcgcggcaacaagggcgcggccctgacctccttcgtctcc
ctggcaggccgttacgtggtgctcatgcccaacaatccgcgcggcggcggcgtgagccgg
cgcatcgagggcgatgaccgcgccgaactgaaggaggcgctggaccagcttgaataccct
aacggcatgtccatcatcgcgcgcacggccggcatcggtcgcagcgcgccggaactgcag
tgggacctgaactacctgctcaagctctgggaagccattgacgccgcctccaaggccagc
aagggtgctttcctgatttaccaggaaagctctctggtcatccgcgccatccgcgactat
ttcaacagcgacatcggcgacatcctgatcgacacagacgacgtgtacgaacaggctcag
cagttcatggcgcacgtcatgcccgagcacgcggcacgcgtgaagcgctatcgcgacaac
gcaccgctgttcagccgcttccagatcgagcaccagatcgagtcggcctacgcccgcacc
gtgaccctgccgtccggcggcgccatcgtgatcgaccacaccgaagccttggtgtcggtg
gacgtgaactccgcgcgcgccatcaagggcggcgacatcgaggaaaccgcgacccgcacc
aacctggaagccgccgatgaagtggcgcgccagatgcgcctgcgcgacctgggtggcctg
atcgtcatcgacttcatcgacatggaggaaagtcgcaatcgccgcgaggtcgagaaccgc
ctgcgcgacgccttgcgccaggaccgcgcccgcgtgcagttcggcaccatctccaagttc
ggcctgatggaaatgagccgccagcgcctgcgcccggcgctgtccgaaggtgcctccatt
ccctgcccgcgctgcggcggctctggccacattcgcgacaccgagtcgagcgcgctgcag
atcctgcgcatcatccaggaagaatcgcagaaggacaacacggctgccgtgcatgtgcaa
gtgcccgtggacgtggcgtccttcctgctcaatgagaagcgcaacgagatcaccaagatc
gagctcaagcagcgcctcaacgtgctgatggtgcccaacaagtcgctggagacgcccaac
tacaagctggagcgcctgaagcacgacgatccacgcctggaccgcgtcgaggccagctac
gccatggccgaggagatcgaggatcccacggccatcacgcgccgctcgcaagagcccacc
aacaagcagacgcccgtgctcaagggcttcctgccggacgcgccgcccgcgcccctgcct
accccggctgcggcgcccaagtccgcggccccggtggccaagcaggccgcgcacaagacc
gccaagacagccggcggcgacaccgaaagcggcttcttcggttggatcaagcgcctgttc
ggtggtgcggaaacgaaacccgcggccggccgtgcacacggcgacaagaaagatgcacgc
cgcgagggcggacgtgacggcggacgaggcggtcgccgcgaagacagccaaggccggcgc
gaagatacgcggggtgagggtcgccagcgcggcggtagcaacaccaacggcggccggggc
cgccaggagcagcaggcgcgcggcgagcgtaccgaacgcggcgatggccaggcccgcaac
gaggcacgcagtggcggcggcaatgagcaacgccaggaacgcgcgccgcgcggcggcgag
gcacgcggtggtcgtcaggacggccggggcgaacagccccgcagcggccgcggcgaacgc
gcggaacgtcctgagcgcgcggagcggcccgaacgtgaacgtgctgagcgccaggaacgc
acggagcgtcccgaaggcggtgagcaaccgcgtcgcgaacggcaggaacgccccgaaggt
ggtgaacagccacgtcgcgaacggcaggagcgtccccgtcgcggtgagcaggaacagcgt
gcgccgcaggaagtgctggaagcaggccaggccatggacttgacggcggaaaacacaggg
cttgtcgccccgggtttggacgaagccggccaagcgggatcgggacagaacacgcgggaa
cgacgctcccgcgaccgttacggccgcgatcggcgtgagcgcggcgagcgcaacggtggc
cagggccgcggtggcgaatcgcagggcgagccggaagctgccgacaccgatggccaggcc
caggcgatggcgcccgccaaggaagcggccacgcccggggtgagctcggaaacccaaacc
ccaaccgcctccacatccgcgaacacgggtggccagaaactgccgcgcgtgcagtcctac
aagctgcccctgagcaccttgaacgaggtggcctcggcagccggtctgctgtgggtgaac
tccgacgccgagaaggtggcaaccgtgcaagcggccatcgccgccgaacctcagcccgtg
catgtgccgcgcgaacggcccgcacccgtggtactcgatgaaggtccactggtcctggtg
gaaacgcgcaaggacctgagcgcgctgaaactgcccttcgaacagcagtaa
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