Hylemonella gracilis: DW355_10445
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Entry
DW355_10445 CDS
T09883
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hgr
Hylemonella gracilis
Pathway
hgr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hgr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DW355_10445 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hgr03019
]
DW355_10445 (rnr)
03016 Transfer RNA biogenesis [BR:
hgr03016
]
DW355_10445 (rnr)
Enzymes [BR:
hgr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DW355_10445 (rnr)
Messenger RNA biogenesis [BR:
hgr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DW355_10445 (rnr)
Transfer RNA biogenesis [BR:
hgr03016
]
Prokaryotic type
tRNA degradation factors
DW355_10445 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QBK05127
UniProt:
A0A4P6UM18
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All DBs
Position
2210778..2213195
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AA seq
805 aa
AA seq
DB search
MYNKKISHSGSAHAAAALLEEIEGTVSGHRDGHGFVVRDDGEADIYLSSSEMRAVLHKDR
VKVRVVRHDRKGRPEGRVVEIIERSNQPIIGRLLQESGVWLVAPEDKRYGQDILIPRGAT
GQARVGQVVVVELVEPPALYGQPVGRVKEVLGEVDDPGMEIEIAVRKYSVPHDFSEACIA
QARALPDKVRPQDWKNRVDLTDVPLVTIDGEDARDFDDAVYCEPVTLGRGKGAKKGWRLL
VAIADVSHYVETGAPIDVDAYERATSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLCMVCD
MLIQGEGEDKGEIAAYQFYPAVMHSHARFTYTEVAAILANTRGAEAARRKDRVGDLLHLH
EVYRTLLTARSRRGAVDFETTETQIVCDESGRIEKIVPRVRNEAHRLIEEAMLAANVCSA
DFIGQSKHSGLFRVHEGPTPEKNEILRNYLKAMGVGLTIGEDPKPAEFQRIAEAVKDRPD
AQQIHTMLLRSMQQAIYTPFNSGHFGLAYEAYTHFTSPIRRYPDLLVHRVIKAILGKSRY
HLPDLPTPGEAHAKLARRLEKNEAARKPSSGTVKATGEKAKKASAELLAWQAAGLHCSAN
ERRADEASRDVEAWLKCKYMREHLGEEFYGVVSAATSFGIFVTLDAMYVEGLVHITELGG
EYFRFDEARQELRGERTGIRYAIGTRVRVQVSRVDLDGRRIDFRLVKGDEMGVPREPVRE
AREHRESVSEKADGDVDMGEDRPTRKTARTATGAKKTSSAKSPTRKTSGKRDKLASLSPI
QALKASVKSAVKKAAAKTMARKTKR
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
ttgtataacaagaaaatcagccattccggttccgcgcatgcggcagcggccctgctcgag
gaaatcgagggcacggtcagcggccaccgggacgggcacggcttcgtggtccgcgacgac
ggcgaagcggacatctatctctcctccagcgaaatgcgcgcggtgttgcacaaagaccgc
gtcaaggtgcgtgtcgtgcgtcatgaccgcaaaggccgcccggaggggcgtgtggtcgaa
atcatcgagcgttccaatcaacccatcattggacgcttgctgcaggagagtggcgtctgg
ctggtggcgcccgaggacaagcgctacggccaggacatcctgataccccgaggcgcgaca
gggcaggcccgggtcggtcaggtcgtggtggtggagttggtcgagccgcccgccttgtat
gggcaaccggtggggcgtgtgaaggaagtgctgggcgaggttgacgatcccggcatggag
atcgaaatcgcggtgcgcaagtacagcgtgccgcatgacttctccgaggcctgcatcgcg
caggcgcgtgctctgccggacaaggttcgtccgcaggactggaagaaccgggtcgatctg
acggacgtgccgctcgtcaccatcgatggtgaggacgcccgcgatttcgatgacgctgtc
tattgcgaacccgtcacgctggggcgaggcaagggcgcgaagaaggggtggcgtctgttg
gtggcgatcgcggacgtgagccactatgtggagaccggcgcgccaatcgacgtggatgcc
tatgagcgtgccaccagcgtctattttccgcgtcgtgtgatccccatgctgccggaaaag
ctgtccaacggcctgtgttccctcaacccggacgtggaccgtctctgcatggtctgtgac
atgctgattcagggcgagggtgaggacaagggggagatcgcggcttaccagttctatccg
gcggtgatgcacagccatgcgcgtttcacctacacggaggtggcggccattctcgcgaac
acccgcggggcggaggcggcacggcgcaaggatcgggttggtgaccttctgcacctccat
gaggtctaccggacgctgctgaccgcgcgttcccggcgtggcgcggtggatttcgagacc
accgagacccagatcgtctgcgacgagagcgggcgcatcgaaaagatcgtaccgcgcgtg
cgcaacgaggcccatcgcctgatcgaggaagccatgctggcggccaatgtttgcagcgcc
gatttcatcggccagagcaagcacagcggccttttccgcgtgcatgaaggcccgacgcct
gagaagaacgagatcctgcgcaactacctgaaagccatgggcgtcggcctgaccattggc
gaagatccgaagccagccgaattccagcgcatcgccgaggccgtgaaagaccggcccgat
gcgcaacagatccacaccatgctgctgcgttccatgcagcaggccatctacacccccttc
aacagcgggcacttcggcctggcctacgaggcctacacgcatttcaccagtcccatccgc
cgttatccggacttgctggtacaccgcgtcatcaaggccatcctgggcaagtctcgttat
cacctgcccgacctgcccacgccgggcgaggcgcacgccaagctggcccggcgcctggag
aagaatgaggctgcccgcaagccttccagtggaaccgtcaaagctacgggcgaaaaagcc
aagaaggccagcgccgagctgctggcctggcaggccgctggcctgcattgcagcgccaac
gagcgtcgggccgacgaggccagtcgtgacgtggaagcctggctcaagtgcaagtacatg
cgcgagcatctgggcgaagaattttatggcgtggtcagcgcggccaccagctttggcatt
tttgtcacactggacgccatgtacgtcgaggggctggtgcacatcacggaattgggtggc
gagtacttccgtttcgacgaggcgcgacaggagttgcgcggcgaacgtaccggtatccgt
tatgccatcggcacgcgtgtgcgggtgcaggtcagtcgcgttgatctggacggccggcgc
atcgattttcgcctcgtcaagggcgatgagatgggcgtgcctcgtgagcccgtgcgcgag
gcgcgggagcatcgggagtctgtgtctgagaaagccgatggagatgtggacatgggcgaa
gaccgcccgaccaggaaaacagctcgtacggctacgggcgccaagaagaccagcagtgcc
aagtcccccacccgaaaaaccagcggcaagcgcgacaagctggcgtcgctaagcccgatc
caggcgctaaaggcctctgtcaaatccgccgtcaagaaggcggcggccaagaccatggcg
cgcaagacgaaacgttga
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