Hylemonella gracilis: DW355_11340
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Entry
DW355_11340 CDS
T09883
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hgr
Hylemonella gracilis
Pathway
hgr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hgr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DW355_11340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hgr03021
]
DW355_11340
Transcription machinery [BR:
hgr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DW355_11340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r2
Sigma70_r1_1
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
SPO22
OVT1
DUF6522
Motif
Other DBs
NCBI-ProteinID:
QBK05266
UniProt:
A0A4P6UKY9
LinkDB
All DBs
Position
complement(2395228..2397570)
Genome browser
AA seq
780 aa
AA seq
DB search
MPAQNSAQKAKKPAAKTAAQAVVKPSAKTVAKAAAKTAVKASSKAPTVSAAKTPAKSAKA
KVDKDAEVTKKPGRPAKTAAAEASAPAKKAAGKPGRKPKAGEASEEEDLTDIEAEFAEEP
AAEETGAAEKVKPLRIKVSKAKERALMKEFGLDETVLSEEDLAKRRERLKLLIKLGKTRG
YLTHGEISDHLPDKLADAETLEVVVAMLSDMGVTVFEQTPDAETLLINNTAPTAASEEEA
EEEAEAAVSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLMDMMEAISA
SPTTIAALLAMAEEIREGKVVISTVVDGFVNAEESDDYVAEEDFDEYDEADDDDGKGGSK
ALTKKLEELKNQALERFDRIRSLFEKVHKAYDKEGYGSPTYVKNQKALSDELMTIRFTAK
TIEKLCDLVRGQVADVRHKERELRRIIVDRCGYPHEQFVLEFGGRDKNGNPAKSHLLDLK
WVEKQAGAGKAWSGIMSRNVPPIQDIQQKLIDLQARVVVPLEHLKDINKRMNQGEAASRA
AKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW
IRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQEFGFEPDASLLAQKMEIPEDKI
RKIMKIAKEPISMETPIGDDDDSHLGDFIEDTANTAPVEAAMQAGLREVVKEILDGLTPR
EAKVLRMRFGIEMTSDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSFTDNL
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgcccgctcaaaattccgcacaaaaggccaagaagcctgccgccaagaccgctgcccaa
gctgtcgtgaagccatccgccaaaaccgttgccaaggccgctgccaaaactgccgtcaaa
gcctcctcgaaagcacccaccgtgtctgccgccaaaacccccgccaaatccgccaaagcc
aaagttgacaaagacgccgaagtgacgaaaaaacccggccgcccggcgaagactgccgct
gccgaagccagtgccccggccaagaaggccgccggcaagcccggtcgcaagcccaaggcg
ggcgaagcctccgaggaagaagacctgaccgacatcgaggccgagttcgccgaggaaccc
gcggccgaggaaaccggcgcggccgagaaggtcaagcccctgcgcatcaaggtcagcaag
gccaaggaacgcgccctgatgaaggagttcggcctggacgaaaccgtcctgtccgaggaa
gacctggccaagcgccgcgagcgcctcaagctgctgatcaagctcggcaagacacgcggc
tacctgacccacggcgaaatctccgaccacttgcccgacaagctggccgatgccgagacg
ctggaagtcgtggtcgccatgctgagcgacatgggcgtgaccgtcttcgagcagaccccg
gacgcggaaaccctgctcatcaacaacacggcccccacggccgcctccgaggaggaagcc
gaggaagaagccgaagccgccgtctccaccgtggacagcgaattcggccgcaccaccgac
ccggtgcgcatgtacatgcgcgaaatgggcacggtggaactgctgacacgcgaaggcgaa
atcgaaatcgccaagcgcatcgaaggcggcctgatggacatgatggaggccatctccgcc
tcgcccaccaccatcgccgcactgctggccatggccgaggaaatccgcgaaggcaaggtc
gtgatctccaccgtggtggacggcttcgtcaacgccgaggagagcgacgactacgtggcc
gaggaagactttgacgagtacgacgaagccgacgacgacgatggcaagggcggcagcaag
gccttgaccaagaaacttgaggagttgaagaatcaggcgctggaacgctttgaccgcatc
cgttcgctcttcgagaaggtgcacaaggcctacgacaaggagggctacggctcgcccacc
tacgtcaagaaccagaaggccctgtccgatgagttgatgaccatccgtttcacggccaag
accatcgagaagctgtgtgacctggttcgcggccaggtggccgacgtgcgccacaaggaa
cgcgaactgcgtcgcatcatcgtggaccgctgcggctacccgcatgaacaattcgtgctc
gaattcggcggccgcgacaagaacggcaacccggcgaaatctcacctgctcgacctgaag
tgggtggaaaagcaggccggcgcgggcaaggcatggagcggcatcatgagccgcaacgtc
ccgcccattcaggacatccagcaaaagctgatcgacctgcaagcccgcgtggtggtaccg
ctggagcacctgaaggacatcaacaagcgcatgaaccagggcgaagccgcctcgcgcgcg
gccaagaaggagatgatcgaggccaacctgcgcctggtgatctccatcgccaagaagtac
accaaccgcggcctgcagttcctggacctgatccaggaaggcaacatcggcctgatgaag
gccgtggacaagttcgagtaccgtcgcggctacaagttctcgacctacgcgacgtggtgg
atccgccaggccatcacgcgctccatcgctgatcaggctcgcaccatccgcatcccggtg
cacatgatcgagaccatcaacaagatgaaccgcatcagccgccagcacttgcaggagttc
ggcttcgagccggacgccagcctgctggcgcagaagatggagatccccgaggacaagatc
cgcaagatcatgaagatcgccaaggagccgatctcgatggaaacccccattggcgatgat
gacgacagccatttgggcgacttcatcgaggacacggccaacaccgccccggtggaagcg
gccatgcaggccggcctgcgcgaggtggtcaaggaaatcctcgatggcctcaccccacgc
gaagccaaggtgctgcgcatgcgcttcggcatcgagatgaccagcgaccacacgctggaa
gaagtgggcaagcagttcgacgtgacccgcgaacgtatccgccagatcgaagccaaggcc
ctgcgcaagctcaagcaccccagccgctcggacaagctgcgcagcttcacggacaatctg
tga
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