Helicobacter gastrocanis: NHP190003_08820
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Entry
NHP190003_08820 CDS
T10845
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hgs Helicobacter gastrocanis
Pathway
hgs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hgs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NHP190003_08820 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hgs03021
]
NHP190003_08820 (rho)
03019 Messenger RNA biogenesis [BR:
hgs03019
]
NHP190003_08820 (rho)
Transcription machinery [BR:
hgs03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NHP190003_08820 (rho)
Messenger RNA biogenesis [BR:
hgs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NHP190003_08820 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
AAA_28
S1CSD-TOTE-2
Spore_III_AA
AAA_25
Motif
Other DBs
NCBI-ProteinID:
BCZ17600
UniProt:
A0ABN6I1Z2
LinkDB
All DBs
Position
complement(818235..819533)
Genome browser
AA seq
432 aa
AA seq
DB search
MADHHKQKTHTPVSGYRIEELRAHPTERLLEIANELKVENPQEFKRQDLMFEILKNQVSQ
GGYILFTGILETAGDGYGFLRGLDGSFSDNQNDTYVSHSQIKRFALRNGDIVTGQVRAPK
DQEKYYALLKIEAVNYLPLDEIRHRPLFDNLTPLFPTEQLKLEYEPTKVTGRMLDLFSPM
GKGQRALIVAPPRTGKTELMKELAHGITYNHPEVELIILLVDERPEEVTDMQRSVRGQVF
SSTFDLPSTNHIRIAELVLERAKRRVEMGKDVVILLDSITRLARAYNAITPSSGKVLSGG
VDANALHKPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEIVLARS
ISDRRIYPAFDVLKSGTRKDNILLGKDTLTKVWVLRNVMQQMDDVEALNFIYSKMQTTKD
NQEFLKLMQEGS
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggccgaccaccataaacaaaagacccacacccctgtgagtggataccgcattgaagaa
ttgcgcgctcaccccacagaacggcttttagagatcgccaatgaactaaaagtcgaaaac
ccccaagagtttaaacgccaagatttgatgtttgaaatcctaaaaaatcaggtttctcaa
ggtggctatattctttttacggggattttagaaaccgccggggatgggtatgggtttttg
cgtggtttggatgggagtttttcagataaccaaaacgacacctatgtgagccattcacag
atcaaacgctttgccttgcgcaatggcgacattgttaccgggcaggtgcgcgcccctaaa
gatcaagaaaaatactacgccctgctaaagatcgaggcggtcaattacctgcccctagat
gaaatccgccaccgcccactctttgacaacctaacccctctatttcccaccgaacagctt
aaattagagtatgagcccaccaaggttacaggacgcatgctagacttgtttagccccatg
ggcaagggccaaagggcactcattgtcgccccaccgcgcacaggtaaaaccgaattgatg
aaagagctcgcgcatgggatcacctacaaccaccccgaagtggagttgatcattttattg
gtggacgaacgccccgaagaagtgacagacatgcaaagaagtgtgcgcgggcaagtcttt
agctctacttttgacctgccctccaccaaccacatacgcattgccgagctcgtgctcgag
cgggcaaagaggcgggtggaaatgggtaaagatgtggtgattttgctagattcgatcacc
cgcctagcgcgggcttacaacgcgatcacaccctcaagcgggaaggtgctaagcgggggc
gtggatgccaacgctttgcataaacccaaacgcttttttggcgcagcccgcaacattgaa
gagggggggagcttaacgatcatcgccaccgccttgattgaaaccggctcacgcatggat
gaggtgatttttgaagagtttaaaggcacgggcaatagcgaaattgtgctggctagaagc
atctcggatcggcgcatttaccccgcctttgatgtgctaaaatcgggcacccgtaaagac
aatatcctgctaggcaaggacacgctaactaaggtgtgggtgttaagaaatgtgatgcaa
caaatggacgatgtggaagcgctgaacttcatttactccaaaatgcagaccacaaaggac
aaccaagagttcttaaaactcatgcaagagggttcttga
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