Helicobacter gastrocanis: NHP190003_12050
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Entry
NHP190003_12050 CDS
T10845
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta/beta' RpoB
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
hgs Helicobacter gastrocanis
Pathway
hgs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hgs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NHP190003_12050 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hgs03021
]
NHP190003_12050 (rpoB)
03400 DNA repair and recombination proteins [BR:
hgs03400
]
NHP190003_12050 (rpoB)
Enzymes [BR:
hgs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NHP190003_12050 (rpoB)
Transcription machinery [BR:
hgs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NHP190003_12050 (rpoB)
DNA repair and recombination proteins [BR:
hgs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NHP190003_12050 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb2_2
RNA_pol_Rpb1_3
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb1_4
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BCZ17923
LinkDB
All DBs
Position
1146463..1155105
Genome browser
AA seq
2880 aa
AA seq
DB search
MPQDLPVPNLLLLQKDSYEAFLYTKEGRESGIERVFKSVFPIHDSQNRITLEYGGCEYGE
PKYTVREAMERGITYSVYLKIKIRLILWEKDPKTGEKLGPKDIKEQSIFIREIPLMTERT
SFIINGVERVVVNQLHRSPGVIFKEEKSTTSANKLIYTGQIIPDRGSWLYFEYDVKDILH
VRINKRRKVSATILFRALGYSKQDIIRIFYPLLEVRYKPDGEGGRYFIPFESIATDSRLD
FDLKDEKGRVLLAASRKLTSKKAKEIKESGVEWVEYPAKILLNRYLAEPILDKNQEILFD
ALTLLEQPKLDKLKEMEIKEFVIANDLALGHDASIIKSFTSDNESLKNESQRLLKQSEKV
EDENALAAIRIYKVMRPGDPVTAEVAQQYVQQLFFDPERYDLTMVGRMKMNHKLHLKVPN
YVTVLTHEDIIETVKYLIKIKNGQGRIDDRDHLGNRRIRAVGELLANELHEGLMKMQKTI
KDKLTTMNTNLDALMPHDLVNSKMITSTILEFFMSGQLSQFMDQTNPLSEVTHKRRLSAL
GEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTKVNELGFIEAPYKK
VIEGQVSGQVEYLTAIQEEGHVIAPASTTLDAKGHICEDLVETRVGGEIVLNEKSKVTLM
DLSSRILVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLHSEAPIVGTGIESVIARDSW
GSVKAERRGVVDEVDSENIYIVEKDPQKGPHITSYVLQKNLRTNQNTCFSQVPIVKVGDV
VEEGQIIADGPSMDQGELALGKNIRVAFMPWNGYNFEDAIVVSEKITKDDVFTSVHIYEK
EIEARELKHGIEEFTADIPDVKEEEVAHLDNGGIVKIGTYVSAGMILVGKVSPKGEMKST
PEERLLRAIFGDKAGHVVNKSLYCPPSLEGVVIGVKIFTKKGYEKDARAASAYEEEKWVL
DDRHDKHFKMLDKEEALQISAIFSQEPLEEEVVLNDIIYPKGSKIPKEVVENTNRFGLIS
LSKKFSKEVQNRFEQIKNNILEQKKLLGQSHEKKLSILEKDDILPNGVIKQVKIYIATKR
KLKVGDKMAGRHGNKGIVSNIVPIADMPYTADGEPIDIVLNPLGVPSRMNIGQILEVHLG
LVGKQLGRQISALLEQHTTDMLAKLRAKMLEIAHVVNVHNHDLAQMLEKCSDAQLLEYAR
DWQSGVKFAIPVFEGISQEQFANLFKLAQIDLDGKTELFDGRTGEKMKERVNVGYMYMLK
LHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLKEMLTVK
SDDIKGRENAYRAIARGEHVGESEIPETFYVLTKELQSLALDVNIFNEEVDEFGMPKPIV
IKEDERPKDFSSFQLTLASPDKIREWSYGEVKKPETINYRTLKPERDGLFCMKIFGPTKD
YECLCGKYKKPRYKTIGTCEKCGVAITSSKVRSFRMGHIELATPVAHIWYVNSLPSRIGT
LLGIKMKDLERVLYYEAYIVKDPAQTCYNIEGTKPVLKYDILNEEQYQNIQRHNSDPDFN
AQMGGEVIKELLEELDLVGLLESLKEEVKITNSDAKKKKLVKRLKVVESFINSGNRPEWM
MLTALPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEIIVRNEKR
MLQEAVDALFENGRNANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVV
GPNLNMDQCGLPKNMALELFKPHLLSKLEEKGFATTLKQAKRMIEQKTNEVWECLEEIVE
GYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVPLSQEAI
TECKVLMLSSMNILLPASGKAVAVPSQDMVLGLYYLSLEKSGVLGEHKLFSSVAEVLMAV
DAKELDVHAKVRVLQEHHILQTTAGRLVIKSILPDFVPTHLWNKVLKKKDIGALVDFVYK
ESGIGQTAKFLDNLKNLGFRYATKAGISISMEDIITPTNKASMVEVAKERVKAIQAQFEG
GHLSEQERYNKIIDIWTEVNDAMSQEMMASIASDKQGFNSIYMMADSGARGSAAQIRQLS
AMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKTATAGYLTRKLI
DVAQNVKVVQEDCGTHEGIEITDITVGSELIEPLEERIFGRVLVEDIIDPLTNEVLLNAD
TMVDEEKAKRIVEAGIKSVTIRTPVTCKAQKGVCAKCYGLNLGEGKMVKPGEAVGVVAAQ
SIGEPGTQLTLRTFHVGGTASRSQEEREIVAGHEGFVRFFNVKTYQNKEGKNIIVNRRNA
AILVVEPKIKAPFAGTLKIDSAHEEVVLSVSDGAKEAKFVLRKSDVAKPNELAGVSGKIE
GKIYLPYGNGHSVHEGGSIADIIKDGWNVPNRIPYASEIAVQDNDPITQETMAKEKGVVK
FYNLVGDHLERARGIKAGDIVEEKGLFAVVADENDQEAIRHYIARNSLVQVDDNSLVEAN
TLLVKPSTESKNVIASWDPYNTPIIADMGGVVRFIDIVAGVSVTETEDENTGVHSLVVNE
YIPTGFKPSLMIEAEGQEPLYYPLEPKTSIVIAEGAQVEIADVLAKIPKATAKSKDITGG
LPRVSDIFEARKSKPKDLAILSEIDGQVSFDKPVRNKERVCITAADGRKAEYFIDKGKQI
LVHPNEFVHAGEAITDGVVSSHDILRISGEKELHKYIVSEVQQVYRRQGVNIADKHIEII
VSQMLRQVRILDSGNTKFIEGDLVSKKHFKEENQRVLSAKGEPAIAEPVLLGITRAAIGS
DSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTGLYKDKKVGVKTDKH
NT seq
8643 nt
NT seq
+upstream
nt +downstream
nt
atgccccaagacttgcccgtccctaatctcttgctcttgcaaaaggacagctacgaagcg
tttttatacaccaaagagggcagagagagtgggattgaacgggtctttaaatcagtcttt
cccatccacgacagccaaaaccgcatcactttagagtacgggggctgtgaatacggcgaa
cctaaatacaccgtgcgtgaggcgatggagcggggcatcacctattcggtttatcttaaa
atcaaaatccgcttgattctttgggaaaaagaccccaaaacgggcgaaaaactaggcccc
aaagacatcaaagaacagagcatttttatccgtgaaatccccttgatgacagagcgcact
tcgttcatcatcaatggggtggagcgggtcgtggtcaatcagttgcatagaagcccgggg
gtgatcttcaaagaggaaaaatccaccaccagcgcgaacaaactcatctacaccgggcag
attatccccgatcgcggctcgtggctgtactttgaatacgatgtcaaagacattttacat
gtccgcatcaacaaacggcgtaaagtgtccgccacgattttgtttagagctctaggttac
agcaaacaggacatcatccgcattttctaccccctccttgaagtgcgttacaagcccgat
ggagagggggggcgttacttcatcccctttgagagcatcgccacagacagccgtctagac
tttgacttaaaagacgaaaaagggcgcgtgctcttggccgccagccgcaaactcacctct
aaaaaagccaaagaaattaaagagagcggggtggagtgggtggaatacccggcaaaaatt
ttgctgaatcgttatttagccgaacccattttagacaaaaatcaagaaattctttttgac
gctttaacccttttagaacagcccaaactcgataaacttaaagaaatggagatcaaggaa
tttgtcatcgccaacgaccttgcgctaggccatgacgcttcgatcattaaatctttcact
tccgacaacgaatctttgaaaaacgagtcgcaaagacttttaaagcagagtgaaaaagtg
gaggatgaaaacgccctagcggcgattcgcatttacaaagtcatgcgcccgggcgatccg
gtcacagccgaagtcgcccagcagtatgtccaacaacttttctttgaccccgaacgctac
gacttgacgatggtcgggcgcatgaaaatgaaccacaaattgcatttaaaagtgcccaac
tatgttacggtgctcacccacgaggacatcattgagaccgtgaaatacctcatcaagatc
aaaaacgggcaggggcgcatcgacgatcgcgatcacttgggcaaccgccgcatccgtgcg
gtgggcgagctcttggccaatgagttgcacgagggtctgatgaaaatgcaaaagaccatc
aaagacaagctcaccaccatgaacacgaacctagacgcgctcatgccccatgaccttgtc
aattctaaaatgatcaccagcacgattttagagtttttcatgagcggacagctctcccag
ttcatggaccaaaccaaccctctgtctgaagttacccacaaacgccgtctatccgctcta
ggggagggcggtttggtgaaagaccgcgtgggctttgaggcgcgcgatgtgcaccccacg
cattatgggcgcatctgccccattgaaaccccagaggggcaaaacatcggactcatcaac
accttatccacttttaccaaagtgaacgaactcggcttcattgaagccccttataaaaag
gtgatcgaggggcaggtgagcggacaagtggagtatttaaccgctatccaagaggaaggg
catgtcatcgcaccggccagcaccaccctagacgctaaggggcacatctgtgaggattta
gtggaaacccgcgtgggtggggagattgtgctgaatgaaaagagcaaagttactttaatg
gacttgagctcacgcattttggtgggtgtggccgcttccttgatccccttcttagaacat
gacgatgccaaccgcgccctgatggggacgaacatgcagcgccaagccgtgcccttattg
cactcagaagcccccattgtgggcaccggcattgaaagcgtgatcgcacgcgattcgtgg
gggagtgtgaaggcagagcggcggggcgtggtggacgaagtggattcagaaaacatctac
atcgtggaaaaagacccccaaaagggcccgcacatcacttcttatgtgctccaaaagaac
ctgcgcaccaaccaaaacacctgttttagccaagtccccatcgtcaaagtgggcgatgtg
gtggaagaggggcagatcatcgccgatggccccagcatggatcaaggcgagctggccctg
ggtaaaaacatccgtgtggcgttcatgccctggaatggctataactttgaagacgcaatt
gtagtgagtgagaagatcaccaaagacgatgtcttcacctccgtgcacatctatgaaaaa
gagatcgaggctagagagctcaaacacgggatcgaggaattcaccgccgatatccccgat
gtcaaagaggaagaggttgcccacttagacaatgggggaatcgttaagatcgggacttat
gtgagtgcgggcatgattttggtcggcaaggtctcgcctaagggcgagatgaaaagcacg
cctgaagagcggctacttagagccatctttggagacaaagccgggcatgtggtgaacaaa
tcgctttattgccccccctccttagagggcgtggtgatcggagtgaaaatcttcaccaaa
aagggctatgaaaaagacgcgcgggcggccagtgcctatgaagaggaaaaatgggtgcta
gacgatcgccacgacaagcattttaaaatgctagacaaagaggaagccctgcaaatcagc
gcgattttctcccaagagcccttagaggaggaggtggtactaaatgacatcatctacccc
aagggcagcaaaatccccaaagaagtcgtggagaacacgaatcgctttggtttgatctct
ttgtctaagaaattcagcaaagaggtgcaaaaccgcttcgagcagatcaaaaacaacatc
ttagaacaaaagaaacttctaggccaaagccacgagaaaaaactctctatcctagaaaaa
gacgacattttgcccaacggagtcatcaaacaagtcaaaatttacatcgccaccaagcgc
aagctcaaagtgggggataaaatggccggacggcatggcaacaagggcattgtgtctaac
atcgtgcccatcgccgacatgccctacaccgccgatggcgagcccatcgacattgtgctc
aaccccctaggggtgcctagccgcatgaatattgggcagattttagaggtgcacttgggg
cttgtgggcaaacaattagggcggcaaatcagcgcgctcttagagcaacacaccacggac
atgctcgccaaactgcgtgctaaaatgctcgagatcgcccatgtcgtgaatgtccacaac
cacgatctggcccaaatgctcgaaaaatgcagcgatgcgcagcttttagaatatgcccgc
gattggcaaagtggcgtgaagtttgcgatccccgtctttgagggcatcagtcaagagcaa
tttgccaatctgttcaaactcgcccaaatcgatctagacggcaaaaccgagctgttcgat
ggccgcacgggcgaaaagatgaaggagcgcgtgaatgtgggctatatgtacatgctcaaa
ctccaccacctcgtggatgaaaaggtgcacgccagaagtacgggcccctattctctagta
acacaccagcccgtgggcgggaaggcgctctttggggggcaacgctttggggaaatggaa
gtgtgggccctagaggcttacggggcggcgcacaccttaaaagaaatgctgaccgtcaaa
tccgatgacatcaagggcagggagaacgcttatagagcgatcgctagaggcgagcatgtg
ggcgagagcgaaatccccgaaactttttatgttttgactaaagagttgcaatctttggcc
ctagatgtcaacatctttaatgaggaagtcgatgaatttggcatgcccaaacccattgtc
attaaagaggatgaacgccccaaagacttcagctctttccagctcacccttgctagtccg
gataaaatccgcgaatggagctatggggaggtgaaaaagccagagaccatcaactaccgc
actctaaaacccgagcgcgatggactcttttgtatgaaaatctttgggcccaccaaagat
tacgaatgtctgtgtggcaaatacaaaaaaccccgctacaagaccattggtacttgtgaa
aaatgcggcgtggcgatcaccagctctaaagtgcgctcttttagaatggggcacattgag
ctggccacccctgtggcgcacatctggtatgtcaactctctacccagccgcatcggcacg
cttttaggcatcaagatgaaagatttagagcgcgtgctctactacgaggcctacatcgtc
aaagaccccgcacagacatgctacaacattgagggtacaaagcccgtactcaaatacgac
attttaaacgaggaacagtaccaaaacatccagcgccacaacagcgatccggacttcaac
gcccaaatgggcggcgaggtcattaaagagctcttagaagagttagaccttgtgggcttg
ctcgagtccttaaaagaggaagtgaagatcaccaactcggatgccaagaaaaagaaactt
gtcaaacggctgaaagtcgtggaaagcttcatcaattcgggcaaccgccccgagtggatg
atgctcaccgccctgcccgtgttgccccccgatttgcgcccccttgtcgccctagatggg
ggcaagtttgccgtgagcgatgtgaacgaactttacagacgggtgatcaaccgcaaccaa
cggcttaaacggctgatggagctgggcgcgccagagatcatcgtgcgcaatgaaaaacgc
atgctgcaagaggcggtggacgcgctctttgagaatgggcgcaacgccaacgccgtgaag
ggcgcgaacaaacgccccttaaaatcgctctctgaaatcatcaagggcaaacaaggtcgt
ttccgccaaaacctgctgggtaaacgggtggacttctcgggccgcagtgtgatcgtggtc
gggcccaacctcaatatggaccagtgcgggttgcctaaaaacatggctttagagctcttt
aaaccccatttgctctccaaactagaggaaaaaggctttgccaccacgctcaaacaagcc
aaacgcatgatcgagcaaaagaccaacgaggtttgggagtgcttggaggaaatcgtggag
ggctacccggtgctcttaaaccgcgcccccacgctgcacaaacaatccatccaagctttc
cacccaaaactcatcgatggcaaggcgattcaactccacccgctggtgtgctctgccttc
aacgccgactttgacggcgatcaaatggccgtgcatgtgcccctcagccaagaggcgatc
accgagtgcaaagtcttgatgttgagctcgatgaacattctcttgcctgccagcggtaag
gcggtcgccgtgcccagccaagacatggtgctagggctttactacctctctttagaaaaa
agtggggtgctgggcgagcataaactcttctccagcgtggcagaggtgttgatggcggtg
gatgccaaagaattggatgtgcacgccaaagtgcgtgtcttgcaagagcaccatattttg
caaaccaccgccgggcggctggtgatcaaatccattttgcccgactttgtgcccacccat
ttgtggaacaaggtcttgaagaaaaaggacatcggggcgttggtggactttgtctacaaa
gagagcggcatcggccaaaccgccaaattcttagacaatctcaaaaacctaggctttaga
tacgccaccaaagcggggatttcgatctctatggaggacatcatcacgcccaccaacaag
gcaagcatggtggaggtggccaaagagcgggtgaaggcgattcaggcgcaatttgagggg
gggcacttgagcgaacaagagcgctacaacaaaatcatcgacatttggaccgaggtcaac
gatgcgatgagccaagagatgatggcctccattgccagcgacaagcagggcttcaactcc
atttacatgatggcagatagcggcgcgcgcggttcggctgcgcaaatccgccagctctcg
gcgatgcgtggcttgatgacaaaaccagatggcagcatcattgaaacccccatcatctct
aactttaaagagggactcaatgttttagagtacttcaactccacgcatggggcgcgcaaa
ggcctagccgacaccgccctaaaaaccgccaccgccggttacctcacccgcaagctcatc
gatgtcgcccaaaatgtcaaggtggtgcaagaggattgcggcacgcatgagggcattgag
atcaccgacatcacggtgggcagcgagctcatcgaacccttagaagagcgcatttttgga
cgggtcttggtggaggacatcatcgatccgctcacaaacgaagtccttttaaacgccgac
acgatggtggacgaggaaaaagccaagcgcattgtggaggcggggatcaaatctgtaacc
atccgcacccccgtaacctgcaaggcgcaaaagggcgtgtgcgctaaatgctacggcttg
aatttgggcgagggtaaaatggtcaaacccggcgaggctgtgggcgtggtggcagcccaa
tccatcggcgagccgggcacacaattaaccctgcgcaccttccatgtgggcggcacggct
tctagaagccaagaggagcgcgaaattgtggcaggccacgagggctttgtgcgctttttt
aatgttaaaacctaccaaaacaaagagggcaaaaacatcatcgtgaatcgccgcaacgct
gcgattttggtggtcgagcccaagatcaaagccccctttgccggcacgctcaaaatcgac
agcgcgcacgaggaagtggttttgagtgtgagcgatggcgctaaagaggcaaagttcgtg
ttgcgtaaaagcgatgtggcaaaacccaacgagctggctggggtgagcggcaaaatcgag
ggcaaaatttacttgccctatggcaatggccacagcgtgcacgagggcgggagcatcgcc
gacatcatcaaggacggctggaatgtgcccaaccgcatcccctatgcgagcgaaatcgcc
gtgcaagacaacgaccccatcacccaagaaaccatggccaaagaaaagggcgtggtgaag
ttttataacctcgtgggcgatcacttagagcgcgctaggggcattaaagccggggacatt
gtggaggaaaaggggctatttgcggtggtcgccgatgaaaacgaccaagaggcgatccgc
cactacatcgcccgcaattctttggtacaagtggacgacaacagcttggtggaggcaaac
accctgcttgtcaaacccagcacggaaagcaaaaatgtcatcgccagctgggacccctac
aacacccccatcatcgccgacatgggcggggtggtgcgcttcatcgacattgtcgccggg
gtgagtgtaactgaaacggaggacgagaacacgggcgtacactctttagtggtgaacgag
tacatccccacgggctttaaacccagcctgatgatcgaagcagagggccaagagcccctt
tactaccccctagagcccaaaacttctatcgtgatcgccgagggggcccaggtggagatc
gccgatgtgctcgccaaaatccccaaagccaccgccaaatctaaggacatcacgggcggc
ttgccccgcgtttcagacatctttgaagcacgcaaaagcaagcccaaagatttagcgatt
ttaagcgaaattgacgggcaggtgagctttgacaaacctgtgcgcaacaaagagcgggtg
tgcatcacagccgccgatgggcgcaaagccgagtacttcatcgacaagggcaaacaaatt
ttagtgcaccctaacgaatttgtgcacgccggcgaggcgatcaccgatggcgtggtgagc
agccacgacattttgcgcatcagtggggaaaaagagttgcataaatacatcgtgagcgaa
gtgcaacaagtgtaccgccgccaaggggtcaacatcgccgacaagcacatcgagatcatc
gtctcgcaaatgttgcgccaagtgcggattttagacagcgggaacacgaagttcatcgag
ggcgacttggtgagcaaaaagcattttaaagaggaaaaccaacgggtgctttcagccaaa
ggcgagccggccatcgccgagcccgtgcttttaggcatcacccgtgcggccattggcagc
gacagcatcatctctgcggccagcttccaagagaccacaaaggtgctcactgaggcgagc
atcgcgatgaaaaaggacttcttagaagaccttaaagaaaatgtcgttttagggcgcatg
attcctgtgggcaccgggctgtataaggacaaaaaagtcggggtgaagacagacaaacac
taa
DBGET
integrated database retrieval system
