Helicobacter gastrocanis: NHP190003_13840
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Entry
NHP190003_13840 CDS
T10845
Symbol
uvrB
Name
(GenBank) Excinuclease ABC subunit B UvrB
KO
K03702
excinuclease ABC subunit B
Organism
hgs Helicobacter gastrocanis
Pathway
hgs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hgs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NHP190003_13840 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hgs03400
]
NHP190003_13840 (uvrB)
DNA repair and recombination proteins [BR:
hgs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NHP190003_13840 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NHP190003_13840 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
UvrD-helicase
Kinesin
UBA
UB2H
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
BCZ18102
UniProt:
A0ABM7SDN6
LinkDB
All DBs
Position
complement(1325273..1327231)
Genome browser
AA seq
652 aa
AA seq
DB search
MDFILQAPYKPSLEQEKAVDRLLQGVKQGVAYQTLLGVTGSGKTFSMAQLIAKLQMPTLV
MSHNKTLCAQLYSEFKGFFPKNHVEYFISYFDYYQPESYIPRRDLFIEKDSAINEDLERL
RLSAITSLLGYDDVIVVASVSANYGFGDPMEYLSMLTKLEVGQSVPYTQFLHKLVEMGYE
RQEILERGKFRVVGESVDIFPAYNDTNFIRVEFFGDEIERIYSFDALENKPLKALESYIL
YAANAFIVSQSRLKSALNSIEAELAQRLKFFKENNKPLEYERLKTRTEFDLEMMAATGIC
KGIENYSRHFTDKKAGDTPYTLLDYFAQKKRPFLVIVDESHVSLPQFKGMYAGDYSRKQV
LVDYGFRLPSALDNRPLKYEEFIAKPPYFLFVSATPNPLELELSQGHIAEQIIRPTGLLD
PEYEVRPTQNQVQDLYNTIKEVVARKERVLVTTLTKKMAEELCKHYLEGGLKVQYLHSEI
DAIERNHLIRSFRLGAFDILIGINLLREGLDLPEVSLVAILDADKEGFLRSATALIQTMG
RVARHIHGRVIFYADKITAGMQEAMTTTDKRRAKQIAFNQAHNITPKSTQRPLEDELKDY
TPPKPKSTDKMPKKEKEQLIKKLRIQMQERARVLDFEAAAKLRDEIAKLRGL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggactttatcctacaagccccctacaaaccaagcctagagcaagaaaaggcggttgat
cggcttttacaaggcgttaaacaaggggtggcttaccaaaccttattaggcgttacaggc
agcggcaagacctttagcatggcgcaactcattgccaaattgcaaatgccgactttggtc
atgtcgcataacaaaaccctttgcgcccagctttacagcgaatttaagggctttttcccc
aaaaaccatgtggagtattttatctcctactttgactactaccagcccgagtcctatatt
cctagacgggatttattcattgaaaaggacagcgcgatcaatgaagatttagagcgcttg
cgtctcagtgccatcacttcacttttaggttacgatgatgtcattgtggtggcgagcgtt
tcggcaaactatggctttggcgaccccatggagtatttgagcatgctaaccaaattagaa
gtgggacagagcgtgccttacacgcagtttttgcacaagcttgtagaaatgggctatgag
cggcaagaaattttagagcggggcaagtttagggtggtgggcgagagtgtggatattttc
cccgcctacaacgacacgaattttatccgtgtggagttctttggcgatgagatcgagcgc
atttatagttttgacgctttagagaataaaccgcttaaagccctagagagctacatactc
tacgccgcaaacgctttcattgtgagtcaaagccgcctaaagagtgccctaaatagcatt
gaagccgagttggcccaaaggcttaaattctttaaagaaaacaacaagcccctagagtat
gaacggctcaaaacccgcacagaatttgacctagagatgatggcagccacgggtatatgt
aaggggattgaaaactactcaaggcatttcaccgacaaaaaggcgggcgacaccccctac
accctgctagactacttcgcccaaaagaaacgcccttttttagtcatcgtggacgagtcg
catgtgagtttgccgcagtttaagggcatgtatgccggcgattacagccgcaagcaggtt
ttggtggattacggctttagattgccctccgccctagacaaccgccctctaaaatacgag
gagttcatcgccaagcctccctattttctctttgtgtccgccacgccaaaccccctagaa
ctagagctctcgcaagggcacattgccgagcaaatcatccgccccacagggctattagac
cccgagtatgaagtgcgccccacccaaaatcaagtgcaagatttatacaacacgattaaa
gaagtcgtggcgcgcaaagagcgggtgttggtaacgaccctgactaaaaaaatggctgaa
gagctgtgtaagcactatttggagggcgggcttaaggtgcaatacctacacagcgaaata
gatgcaatcgagcgcaaccacctgatccgctcattcaggctgggcgcatttgacattttg
atcggcattaacctattaagagaggggctagatttgcccgaagtgtctttagtggcgatt
ttagacgcggacaaagaggggtttttaagaagcgcaaccgctttgatccaaaccatgggg
cgggtggcacggcacatccacgggcgggtgattttctacgccgataaaatcacggcgggc
atgcaagaggcgatgacaaccacggacaagaggcgcgccaaacaaattgccttcaaccaa
gcccacaacatcacgcccaaaagcacgcagcgtcccctagaggacgagcttaaagactac
acccccccaaaacccaaatccacagataaaatgcctaaaaaagaaaaagagcaactgatt
aaaaaattgcgtatccaaatgcaagagagggcccgggtgctagactttgaggcagcagca
aagttgcgggatgaaatcgctaaacttagagggctgtga
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