Halorhodospira halophila: Hhal_0659
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Entry
Hhal_0659 CDS
T00462
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hha
Halorhodospira halophila
Pathway
hha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Hhal_0659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hha03019
]
Hhal_0659
03016 Transfer RNA biogenesis [BR:
hha03016
]
Hhal_0659
Enzymes [BR:
hha01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Hhal_0659
Messenger RNA biogenesis [BR:
hha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Hhal_0659
Transfer RNA biogenesis [BR:
hha03016
]
Prokaryotic type
tRNA degradation factors
Hhal_0659
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
HTH_IclR
LexA_DNA_bind
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ABM61441
UniProt:
A1WUS9
LinkDB
All DBs
Position
complement(739742..742270)
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AA seq
842 aa
AA seq
DB search
MAKQTKKSPPKRDPYQEREQAKYDNPIPSREYLLELLAAHRRPLGRREIADALGLESPEH
HEALRRRLRAMERDGQLVRNRRRGYLVVDHSELVRGRVMGRPDGSGFLLPDGTGDRLALS
PRQMRCLLHGDRAVARITGRDEHGTPQGELVEILERGNRQITGRFFEEHGVGFLVPENKR
LQQDVLLAPDGRGGAEDGELAVAEILAQPNERRQPIGRIIQVLGRTIHVGEEDMVAARIH
GIPMDWPAEVEKEVAAFGEEVPEADKEGRTDLRRLPLVTIDGADAKDFDDALYCEPTAKG
WRLVVAIADVSHYVRPGTALDQEARLRGNSVYFPRSVVPMLPEALSNGLCSLNPKVDRLA
MVCDMLLQGNGKVLRSRFYRAVIQSAARLTYEQAAAAVVDGDRKVRSAIGDEVVRHLENL
HGLYKTLRKARDERGAIDFDTTETEMRFDDEGRVVAVEPTERNDFHKVVEECMIAANVCT
AKFLLKNKVPSLYRVHERPGEQKLEQLKEFLAQAGLELGGGDEPTGKDYGRIMEQARERP
DRHLIETVLLRSMQAAEYRPDNAGHFGLALEAYTHFTSPIRRYPDLVIHRGIGHVIDGHR
GRSFPMTHNDLVTLGEHCSMAERRADEATRDAEMTLKCEYLSDHLGDEFTGVIAAVTSFG
LFVSLEGVYVDGLVHITNLESDFFHFDSVGHRLVGDRTGKEYRLSDRVRVRVGRVDKDDR
KIDLEVVAHPVDADGEPLDGSRKRGKGGKSGQGGKARSERSGGKQSAARQGASGGRAKSG
RGKAAPSGSGPSGDGKGKPAEAAEESAEPTAEAQDGGASKGRRRSRRSGRRRSSSSAGGD
SS
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaaccaagaaaagtcccccgaaacgcgatccttatcaggagcgcgaacaa
gcgaagtacgacaaccccatccccagccgggagtatctgctggaactcctcgctgcccat
cggcgcccgctgggccggcgcgagatcgccgacgccctggggctggagagcccggagcat
cacgaggcgctgcgtcgccggctgcgcgccatggagcgcgacgggcagctggtgcgcaac
cgccgccgcgggtacctggtcgtcgatcacagcgaactggtccgcggtcgagtcatgggc
cgcccggacggctccggcttccttctgcccgatggcacgggcgaccggttggccctgtcg
ccgcgtcagatgcgctgcctgctccacggcgatcgcgctgtagcacgcatcaccggccgc
gacgagcacggtaccccgcagggtgagctggtcgagatcctcgagcgcggcaaccggcag
atcaccgggcggttctttgaggagcacggggtcgggttcctggtgccggagaacaagcgg
ctgcagcaggacgtcctgcttgcgccggacgggcgcggcggtgccgaggacggtgagctg
gcggtggccgagatcctcgcccagcccaacgagcgtcgccagcccatcggccggatcatc
caggtgctcgggcgcacgatccatgtcggcgaagaggacatggtggcggcgcggatccac
ggcatccccatggattggcccgctgaggtggagaaagaggttgcggccttcggtgaggag
gtcccggaggccgacaaggaagggcgcaccgatctgcgccggctgccgctggtgaccatc
gacggtgccgacgccaaggacttcgacgacgcgctctattgcgagcccaccgccaagggc
tggcgcctggtggtggccatcgccgacgtctcgcactacgtgcgccccggcacggcgctg
gatcaggaggcgcgcctgcggggcaactcggtctacttcccgcgttcggtggtgccgatg
ctgcccgaggccctgtccaacgggctgtgctcgctgaaccccaaggtcgatcgactggcc
atggtctgcgacatgctcttgcagggcaacggcaaggtgctgcgctcgcgcttctaccgc
gcggtgatccagtcggcggcgcggctgacctacgaacaggccgcggcggccgtggtcgac
ggcgaccgcaaggtgcgatcggccatcggcgacgaggtggtgcgccacctggagaacctg
cacggcctctacaagacgctgcgcaaggcccgcgacgagcggggggccatcgacttcgac
accaccgagaccgagatgcgcttcgatgacgaggggcgtgtggtggccgtcgagcccacc
gagcgcaacgacttccacaaggtcgtggaagaatgcatgatcgctgccaacgtctgcacg
gccaagttcctgctcaagaacaaggtgccgtcgctctatcgggtccacgagcgccccggt
gagcagaagctcgagcagctcaaggagttcctcgcccaggccgggctggaactcggcggc
ggtgatgagcccaccggcaaggattatggccggatcatggagcaggcccgcgagcgcccg
gatcgccacctgattgagacggtgctgctgcgctcgatgcaggcggccgagtatcgcccc
gataatgcgggtcacttcgggctggcgctggaggcgtatacccacttcacctcgcccatc
cgtcgttatccggatctggtgatccaccgagggatcggccacgtgattgatggccaccgg
gggcgtagcttcccgatgacccacaacgacctggtcaccctcggcgagcactgctcgatg
gcggagcgccgggccgacgaggcgactcgcgatgccgagatgacgctcaagtgcgagtac
ctctcggaccacctgggggatgagttcaccggggtgatcgcggcggtgacctccttcggg
ctgttcgtctcgctggagggggtctacgtggacggcctggtgcacatcactaacctggag
agtgacttcttccacttcgattcggtggggcatcggctggtcggcgaccgcaccggcaag
gagtaccggctcagtgaccgggtccgggtccgcgtggggcgcgtcgacaaggacgatcgc
aagatcgacctcgaggtggtcgcccatccggtggatgccgacggtgaaccgctggacggc
agccgcaagcgtggcaagggtggcaagagcggtcagggcggcaaggcccgttcggagcgc
tccggcggcaagcagtctgcggcgcgccaaggggcctccggggggcgcgcgaaaagcggc
cggggcaaggccgctccatccggatccggcccctccggtgacggcaagggcaagccggcc
gaagcagccgaggagtcggcggagccgacggccgaagcgcaggatggcggcgccagcaag
gggcggcgccgaagccggcgctccggtcgtcggcgcagcagcagtagcgccggcggcgac
agcagctaa
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