Halorhodospira halophila: Hhal_1242
Help
Entry
Hhal_1242 CDS
T00462
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hha
Halorhodospira halophila
Pathway
hha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Hhal_1242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hha03019
]
Hhal_1242
03009 Ribosome biogenesis [BR:
hha03009
]
Hhal_1242
Enzymes [BR:
hha01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Hhal_1242
Messenger RNA biogenesis [BR:
hha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Hhal_1242
Ribosome biogenesis [BR:
hha03009
]
Prokaryotic type
rRNA processing factors
Hhal_1242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABM62017
UniProt:
A1WWF5
LinkDB
All DBs
Position
1347159..1349945
Genome browser
AA seq
928 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQILYDLDIEAPSREQKKANIYKGIITRVEPSLEAAFVQY
GAERHGFLPFKEIAPAYFTSADGQRNSPKDGLRENQEVLVQVDKEERGNKGAALTTYISL
AGRYLVLMPNNPRAGGVSRRIEGSDRAEIRESLRQLDVPEGMGLIVRTAGVGRSTEELQW
DLDYLLKLWDAIQNATAERAAPFLVYQESDVIIRALRDYLRSDIGEILVDDDEVFSKARD
FIDQVMPYNRQKLKHYTDPVPLFSRYQIESQIESAFQRDVRLPSGGAIAIDHTEALISID
INSSRATKGADIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMGPPRHQREVESRL
REAVKADRARVQIGRISRFGLLEMSRQRLRSSLGEAHQEVCGRCGGQGTVRSVESLALSI
LRIIEEEAMKEKTGRVLAQLPIEVATFLLNEKRAQIAELEHRYGVHILLIPNRNLETPHY
DIQRMRTDEGPEQSGSSYNLATPAAEPTVIEAGLPASRPPAPAVQGVTPSAPAPGPASGT
EERKRPTGQGAEGQGEDAPLSSIFRRLRGLLFQNSTDQERLTEGDSPRDKASPRRVEAEP
EASEERGGRNGGQSKRGTRRGGRSRGGGRSRRGTGDGGNGQQQRAQTEGDSGPQGSSAET
AQAQDEGKERSNRGSKASSKRKSESSAKAGTTADTETPDTETGTPQPEGAKESTPEDTTQ
TSEARSSSGSGRSGRSRRGRRGGRRRRRSNNGSEQDDGQSGSAATARDSGDTAAESSATQ
DASGTASAASATRDQAAEKPSEPGTQPEAATTQGGSTEARRTSSRKAADQRAQPTDDAKP
PKAAEEGAAPSVKDADASRSDQAEAAEPAAATNAPQQAEEPAETSGRRKHVRSGRPRKPK
TQASGAQNATAPDSDGASVNAEDAERAE
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaacgcaactcagccggaagagttgcgcgttgcactagtggat
gggcagatcctctacgatctcgacatcgaggcaccctcccgcgagcagaaaaaagccaac
atctacaaggggatcatcacccgggttgaacccagcctcgaggcggcgttcgtccagtac
ggcgcagagcgccacggcttcctccccttcaaggagatcgcgccggcctacttcacctcg
gcggacggccagcgcaattccccgaaggacggcctgcgcgaaaaccaggaggtcctggtg
caggtcgacaaagaggagcgcggcaacaaaggcgccgccctgaccacctacatcagcctg
gccgggcgctacctggtgctcatgcccaacaatccgcgtgccgggggagtttcccggcgg
atcgaggggtcggatcgcgcggaaatccgcgagagcctgcgccagctggatgtcccggaa
gggatggggctgatcgtgcgcaccgccggcgttggacgtagcacggaagagctgcagtgg
gacctggattacctgctgaagctctgggatgccatccagaacgccaccgcagagcgcgcg
gccccgttcctggtgtaccaggaaagcgacgtcatcatccgcgcgctgcgtgattacctg
cgttcggatatcggcgagatcctggtcgacgacgatgaagtcttctccaaggcacgcgac
ttcatcgaccaggtcatgccgtacaaccggcagaaactcaagcactacaccgatccggta
ccgctattctcgcgctaccagatcgagagccagatcgagtcggcgtttcaacgcgatgtt
cgcctgccctccggcggcgccatcgccatcgaccataccgaagcgctgatctccatcgac
atcaactcctcgcgcgccaccaagggtgccgacatcgaggagacggccctcaacaccaac
ctcgaggccgccgacgaaatcgcccggcaattgcgtctgcgcgacctcggcggcctgatc
gtcatcgactttatcgacatgggcccaccccgccaccagcgcgaggtcgagagccggctg
cgcgaggcggtcaaggctgatcgcgcgcgggtgcagatcgggcggatctcccggttcggg
ctgctggagatgtctcggcagcgcctgcgctcgtccctcggcgaggcccaccaggaggtc
tgcggccgatgcggtggccaggggacggtgcgcagcgtcgagtccctggcgctgtcgatc
ctgcggatcatcgaggaagaggcgatgaaggagaagaccgggcgcgtcctggcacagctc
cccatcgaggtcgccaccttcctgctcaacgagaagcgggcccagatcgccgaactcgag
caccgctacggcgtgcacatcctgctgatccccaaccgcaatctggagaccccgcactac
gatattcagcgcatgcgcaccgacgaaggcccggagcagagcggcagtagctacaacctg
gccactccggcagcggagccgacggtcatcgaggctggcctgcccgccagtcgccctccg
gcgcccgccgtccagggggttacccccagtgcacccgctccgggccccgcctccggcacc
gaggagcgaaagcgaccgaccggccagggcgcggagggtcaaggggaagacgcccctctg
agctccatcttccgtcggctgcgcggactgctattccagaactccaccgatcaagaacgc
cttacggagggcgattcaccccgtgacaaggcgtcccctcgacgcgttgaggctgagccg
gaggcctccgaggagcgtggcggccgcaacggcggccagagcaagcgcggcacccgacgc
ggtggccgttcccggggtggcggacgcagtcggcggggcaccggcgacggcggcaacgga
cagcagcagcgcgcccagaccgagggcgactcgggcccccaaggctcgtccgccgagacg
gcgcaagcccaggatgaaggcaaggagcggagcaaccggggcagcaaggcaagcagcaag
cgcaagagcgagagcagcgccaaggccgggaccactgccgacaccgagacccccgatacg
gaaaccgggaccccgcagccggagggcgccaaggagtcgacgccggaagacaccacccaa
acctccgaggcccgctcctccagtggctccgggagaagcggacgcagccgtcgaggccgc
cgcgggggtcgccgccgccggcgatccaacaacgggtcggagcaggacgacgggcagtca
ggctcggcggctaccgcgcgtgacagcggcgacacggctgctgagtcctccgccactcag
gatgcatcgggcactgcctcagcggcttcggcaactcgcgaccaggcggccgaaaagccc
tctgagccgggaacgcagcccgaggcggcgacgactcagggaggcagcaccgaggcgcgt
cgtaccagctcccgcaaagccgccgatcaacgggcgcagccgaccgacgacgcgaagccg
ccgaaggcggccgaggaaggcgctgccccatcggttaaggacgccgacgcatcgcgatcc
gaccaggcagaggcggccgaacctgccgcggcaaccaacgcgccacaacaggccgaggaa
ccggcagagacatccggccgccgcaagcacgtccgctcaggccgtccgcgcaagccgaag
acccaggcatctggtgcgcagaatgccacggcgcctgactcggatggcgcttcggtcaat
gcggaagatgcggagagggccgagtaa
DBGET
integrated database retrieval system
