Halyomorpha halys (brown marmorated stink bug): 106678887
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Entry
106678887 CDS
T07536
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
hhal
Halyomorpha halys (brown marmorated stink bug)
Pathway
hhal03013
Nucleocytoplasmic transport
hhal03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hhal00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106678887 (Upf1)
03015 mRNA surveillance pathway
106678887 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhal03019
]
106678887 (Upf1)
Enzymes [BR:
hhal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106678887 (Upf1)
5.6.2.5 RNA 5'-3' helicase
106678887 (Upf1)
Messenger RNA biogenesis [BR:
hhal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106678887 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
106678887 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
UvrD-helicase
DEAD
SLFN-g3_helicase
Helicase_RecD
ATPase
NPHP3_N
AAA_16
nSTAND3
SRP54
AAA_32
AAA_22
Motif
Other DBs
NCBI-GeneID:
106678887
NCBI-ProteinID:
XP_014273194
LinkDB
All DBs
Position
Unknown
AA seq
1115 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEESDLIGADTQGSQYDFTDFTLPSQSQTQTSQLDGSSNQIQV
NGKLNIDLDGVVSAATQKLGELQFEEEEEDTFYNKELPFYACKYCGIHDPSCVVMCNICK
KWFCNGRGNTSGSHIINHLVRAKHKEVTLHKDGPLGETILECYSCGVRNVFVLGFIPAKA
DSVVVLLCRQPCAAQNSLKDMNWDQEQWKPLISDRCFLSWLVKVPAEQDQLRARQVNATQ
IAKMEELWRDNAEATFSDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADYDKRLK
ESQTQDNVDVRWDVGLNKKIIAYFTLAKSDGDMKLMHGDELRLRYLGEMHKSWSGVGHVI
KIPDNYGEEVGIELKSSSGAPTECTSNFVVDFIWKSTSFDRMQYALRKFAVDDVSVSAYI
YHRLLGHDVEDMLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVT
SATIVFQLVKQNGGPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLAL
HNQIRKMDCNTELQKLQQLKDETGELSSVDEKRYRMLKKSAEKELLDAADVICCTCVGAG
DPRLTRLKFHSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKASRAGLS
QSLFERLVVLGIRPFRLEVQYRMHPELSRFPSNFFYEGSLQNGVCSDERKLAKVEFPWPV
PDKPMLFYVTQGQEEIAGSGTSYLNRTEASNVEKMATRFLRAGVKPEQIGVITPYEGQRA
YLVQYMQYQGALHSKLYQEIEVASVDAFQGREKDLIIMSCVRSNEHQGIGFLNDPRRLNV
ALTRAKYGIIIVGNPKVLSKQPLWNHLLNFYKEQKVLVEGPLNNLKESQIQFSKPKQIVN
TTNPGTHFMSTTIYDAREAIVPGSIYDRSSGTNNASHYFPRPAGGGVDLFSRPHDPISYI
SSERGGGTMSNIPVPLGMFMNMSHVPPRFYNQHQQALQARQNQRGRPGSGRVRNRTGNLK
NKLSGLSQNNSQDVTQPYSQGITQAMSQGMSQAGLSLSQAGLSQAELSQDSYLVGEFQSQ
VDGLLSQDSTYQGERSPFYTPPTATTAPPHFSQPY
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggatgcatacggtcctagttctcaaacattaacgtttttagatactgaagaa
agtgaccttatcggagctgacactcaaggatcccaatatgattttaccgattttactcta
ccttcacaaagtcaaacccaaacttctcaattggatggatcttcaaatcaaattcaggtg
aatggtaaacttaacatagatttggatggggtagtttctgctgctacacaaaaacttggt
gaactccaatttgaagaggaagaagaagacaccttttataacaaggaattgccattttat
gcttgtaaatactgtggaattcatgaccctagttgtgtagttatgtgcaatatctgtaaa
aagtggttttgcaatggtcgaggtaatacctctggatcacatatcatcaatcatctcgtt
agagctaaacataaggaagttacgttacacaaagatggcccattgggcgagaccatactt
gaatgttactcttgtggagtccgcaacgtgtttgtattaggatttatacctgccaaagca
gactcggttgttgttctactctgtaggcagccatgtgctgcacagaattctctgaaagat
atgaactgggaccaggagcaatggaaacccctgatatctgaccgttgttttctctcatgg
ttagtgaaagtacctgcagaacaggatcaattgagagctcgtcaagtcaatgctactcaa
attgcaaaaatggaggagctttggcgagacaatgcagaagctacattttcagatttagaa
aaaccaggagttgatgaagaacctcagcaagtcttgctcagatatgaagatggatatcag
taccaaaatatttttggacctttagtcaaattagaggccgattacgataagagattgaag
gaatctcagactcaggataatgttgatgtgagatgggatgtcgggcttaataagaagatc
atagcttattttactcttgcaaaatcagatggagatatgaaattaatgcatggggatgag
ttacgcttaagataccttggtgaaatgcataaatcttggtcaggagttggtcatgttata
aaaattcctgataactatggagaagaagttggcatcgaattaaaatcatcatctggggct
cctactgaatgtacttcgaatttcgtagttgattttatatggaaaagcaccagttttgat
aggatgcagtacgcacttcgcaaatttgctgtcgatgatgtatcagtttcagcttacatt
taccaccgattattaggtcatgatgttgaagacatgctatttagggttcatttaccaaaa
catttttctgctcctaacttacctgatctcaacagatctcaggtttatgccgttaagcat
gctcttcagagaccgctatccttgatccaggggccaccagggaccgggaaaacagtcaca
tcagcaactatagtttttcagcttgtgaagcagaacggaggtccagttcttgtttgcgca
ccttccaatatcgctgtagatcagctcacagaaaaaattcatcgcactggtctcaaggtt
gttcgtgtgtgtgcaaaatcaagagaagctatagattctccagtttcgtttttagctttg
cataatcagataagaaaaatggattgtaatacggaactgcagaaacttcaacagttaaaa
gatgaaactggtgagttatcatctgttgatgaaaagaggtacagaatgttgaagaaatct
gctgaaaaagaactcctggatgcagctgatgtaatatgctgcacttgtgtcggtgctgga
gatccccggcttacacgtctgaagttccattctattcttattgacgaaagtatgcaagcc
actgaacctgaatgcatggttccagttatactgggagcaaagcagttgattttagtcggc
gaccattgtcagttgggtcccgtcgtgatgtgcaagaaagcctccagagctggtttatcc
cagtccctgtttgagcgacttgttgtacttgggatcaggccattccggttagaagtacag
tatagaatgcatcccgaactgtcgagatttccatccaattttttctatgaaggctcactt
cagaatggagtttgttcagatgaaaggaagctggctaaagttgaatttccatggcccgtt
cctgataagcctatgctgttttacgttacccaaggacaagaagaaatagcaggttcagga
acatcttatcttaacagaactgaggcttctaatgttgaaaaaatggctaccagattcctt
agagcaggtgttaaacctgaacaaataggtgttataactccttatgagggtcagagagct
tatcttgttcagtatatgcaatatcagggggcacttcattctaagttgtaccaagaaatt
gaagtggcaagtgttgatgcattccaaggaagggaaaaggatcttattataatgtcctgc
gttagatctaatgagcatcagggaataggatttctcaatgacccacgacgtctcaatgtt
gctcttaccagggctaaatatggaataataattgtgggaaatccaaaagttttatccaag
caaccgctatggaaccatcttctcaacttctataaagaacaaaaagtccttgttgaaggt
cctttgaacaatttgaaggaatcgcagattcagttttctaaaccaaaacaaattgttaat
actacaaaccctggaacgcacttcatgtcgacaactatatatgatgctcgagaagccatc
gttcctggcagtatctatgataggagcagtggcaccaacaatgcctcccattacttccct
cgacctgctggaggtggtgtagatttattttcaagaccacacgatccaattagttatatc
tcatccgagcgtggaggaggaacaatgtctaacatcccagttcctcttggcatgttcatg
aatatgagccatgtaccgcctagattttataaccaacatcagcaagctcttcaagcccga
caaaatcaacgaggaagaccaggaagtggtcgtgttagaaatagaactggcaatctaaag
aataagctgtctggcctgagtcaaaacaacagccaagatgtcacccagccttacagtcag
ggaatcacacaagccatgtcccagggtatgtcacaagctggtcttagcctgtcccaagcc
ggcctctcccaagcggaactctcgcaagactcttacctggttggtgaattccaatcacaa
gtcgatggcctactgtctcaggactctacgtaccaaggagagaggtctccattttacacg
cctcctactgccacaacagctcctccacatttttcgcagccatattaa
DBGET
integrated database retrieval system
