Halomonas halophila: QWG60_10740
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Entry
QWG60_10740 CDS
T09170
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hhao
Halomonas halophila
Pathway
hhao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QWG60_10740 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhao03019
]
QWG60_10740 (rne)
03009 Ribosome biogenesis [BR:
hhao03009
]
QWG60_10740 (rne)
Enzymes [BR:
hhao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QWG60_10740 (rne)
Messenger RNA biogenesis [BR:
hhao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QWG60_10740 (rne)
Ribosome biogenesis [BR:
hhao03009
]
Prokaryotic type
rRNA processing factors
QWG60_10740 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WJY06185
LinkDB
All DBs
Position
2312546..2316085
Genome browser
AA seq
1179 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFLKEPSGRPSIKEVLKEGQEVIVQVDKEERGNKGAALTTFISL
AGRFLVLMPNNPRAGGISRRIEGEERAQLKEAMSHLTVPDKMGLIVRTAGIGRNPEELQW
DLDYLTQVWESITEEAGKRAAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSEQVHQEALG
FIRQVMPSYQQKIKRYADEVPLFSRFQIESQIETAYERDVKLPSGGSIVIDHTEALVSID
INSARATRGSDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMSPARNQREVENRV
RDALKIDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCDGQGTIRDVRSISLSI
MRLIEEEAMKERSAQIRAILPVPVATYLLNEKRAMLADIERRQGVRVVLLPNPEMDTPHY
DVQRLRDDHVDEEGTSHLPSHELPTETEVGKEPEAAFGKPVKRDEAAVKTVVHHEPAPAS
LQEEPAEPAKPKPKPAEKPTQQRPAQKPAAKPAPAAKPAAAPAARDGVLSRLVKGFSRLL
SGEETPPSSQQRQSEGSGQRQAGTARNDERSQQRGESGKSGDNRSGGGNGRQRNNRRGGQ
RQDQRQERGDNRDETRSAKPQRQGEDKARSDRSEKGEKADKSGSQNRGGRGRNQRQDDNR
PQSEGRKSQEGKSQDNKGQERKDKDQGGRKPQEPKSQDAKSQDTKRQSDKPQDTKPQKAK
GDAEATPAKDDGQAEADGKPKRTRNNPRQRRRQHALNPESVAEQQRLQAEAAKAEAQPEE
AKTEAKAEQSKAEEPKADAKAEQPKADAKAEEPKADAKAEEPKADAKAEEPKADAKAEQP
KAETKAEQPKAETKPEQPKAETKAEAPKAEAKAEEPKAETKPEQPKAETKAEQPKAEAKS
EEPKAGTKADAKAETKAEAPKADAKAEEPKAETKAEAPKADAKAEEPKADAKAEEPKADA
KAEEPKAETKPEQPKAETKPEQPKAETKPEQPKAETKPEQPKAETKPEQPKADAKAEQPK
ADAKAEQPKADAKAEQPKAEIKAEAPKAEIKAEEPKADAKAEAPKADAKAEEPKADAKAE
APKADAKAETPRRRRRAHNDPREIRRREQEAKRQDSQQG
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctcatcaacgcgacccagcccgaagagctgcgcgtcgccctggtcgat
ggacaacgcctgtacgacctggacatcgaatccggtgcccgggaacagaagaaagccaac
atctaccgcggcaagatcacccgcgtggaaccctccctcgaagccgccttcgtcgacttc
ggtgccgaacgccacggctttttgcccctcaaggaaatctcccgcgagtacttcctcaag
gaaccctcgggccgccccagcatcaaggaagtgctcaaggaaggccaggaagtcatcgtc
caggtcgacaaggaagagcgtggcaacaagggcgcggccctgaccaccttcatcagcctg
gccggccgtttcctggtactgatgcccaacaacccccgcgccggcggcatctcgcggcgc
atcgagggcgaggaacgcgcacagctcaaggaggccatgagccacctgaccgtgcccgac
aagatgggcctgatcgtgcgcaccgccggcatcggccgcaatcccgaagagctgcagtgg
gacctcgactacctgacccaggtctgggagtcgatcaccgaggaagccggcaagcgcgcc
gcgcccttcctgatctaccgcgagtccaacgtcatcattcgcgccatgcgcgactacctg
cgccaggacatcggcgaggtgctgatcgacagcgaacaggtccaccaggaggcgctgggc
ttcatccgccaggtgatgccttcctaccagcagaagatcaagcgctacgccgatgaagtg
ccgctgttctcgcgcttccagatcgagtcccagatcgagaccgcctacgagcgcgacgtg
aagctgccctcaggcggctccatcgtgatcgaccacaccgaggcgctggtctccatcgac
atcaactcggcgcgcgccacccgcggcagcgacatcgaggaaacggcgctgcagaccaat
ctcgaggccgccgacgagatcgcccgccagctgcgcctgcgcgacattggcggcctggtg
gtcatcgacttcatcgacatgtcgccggcgcgcaaccagcgcgaggtcgagaaccgggtc
cgcgacgccctgaagatcgaccgcgcccgggtacagatcggtcgcatctcgcgcttcggc
ctgatggaaatgtcccgccagcgcctgcgcccgtccctcggcgagaccagcggcgtggtc
tgcccgcgctgcgacggccagggcaccatccgcgacgtgcgctccatctcgctgtcgatc
atgcgcctgatcgaggaagaggcgatgaaggagcgcagcgcccagatccgcgccatcctg
ccggtcccggtcgccacctacctgctcaacgagaagcgggcgatgctggccgacatcgag
cgccgccagggcgtgcgcgtggtgctgctgcccaaccccgagatggacacgccccactac
gacgtgcagcgcctgcgcgacgaccacgtcgacgaggaaggcacctctcacctgcccagc
cacgagctgcccaccgagaccgaggtcggcaaggagccggaggccgccttcggcaaaccg
gtcaagcgcgacgaggccgcggtcaagaccgtagtgcaccacgagcccgccccggcctcc
ctgcaggaagagcccgccgaaccggcgaagcccaagccgaagcccgccgaaaagccgacg
cagcagcggcccgcccagaagcccgccgccaaaccggccccggcggcaaaacccgctgcc
gctcccgccgctcgcgatggcgtgctgagccgcctggtcaagggcttctctcgcctgctg
agcggtgaagagacccccccgtccagccagcagcgtcagtccgagggcagtggccagcgt
caggccggcaccgcccgcaacgacgagcgcagccagcagcgtggcgaaagcggcaagagc
ggcgacaaccgctccggtggcggtaacggccgccagcgcaacaatcgtcgcggcggccag
cgccaggaccagcgtcaggagcgcggtgacaatcgcgacgagacgcgcagcgccaagccg
caacgtcagggcgaggacaaggcccgtagcgaccgctccgagaaaggcgagaaggccgac
aagagcgggagccagaaccgcggcggtcgcggtcgcaaccagcgccaggacgacaaccgt
ccacagtccgagggccgcaagtctcaggaaggcaagagccaggacaacaagggacaggag
cgcaaggacaaggaccagggcggccgcaagccccaggaacccaagtcccaggacgccaag
tctcaagacaccaagcgccagagcgacaagcctcaggacaccaagccccagaaggccaag
ggcgacgccgaagcgacgcctgccaaggatgacggccaggccgaggcggacggcaagccc
aagcgcacccgcaacaacccgcgccagcgtcgtcgccagcacgccctgaacccggagtcc
gtggccgaacagcagcgcctgcaggccgaagccgccaaggcagaagcacagccggaagag
gcgaagaccgaagccaaggccgagcagtccaaggccgaagagccgaaggccgacgccaag
gcggaacagcccaaggccgatgccaaggcggaagagcccaaggccgacgccaaggcggaa
gagccgaaggccgatgccaaggcggaagagcccaaggccgacgccaaggcggaacagccc
aaggccgagaccaaggcagaacagccgaaggccgagaccaagcccgagcagcccaaggcc
gagaccaaggctgaagcgcccaaggccgaggccaaggcggaagagccgaaggccgagacc
aagcccgagcagcccaaggccgagaccaaggcggaacagccgaaggccgaagccaagtcc
gaagagccgaaggccgggaccaaggcagacgccaaggccgaaaccaaggctgaagcgccc
aaggccgacgccaaggcggaagagccgaaggccgaaaccaaggctgaagcgcccaaggcc
gacgccaaggcggaagagccgaaggccgacgccaaggcggaagagccgaaggccgacgcc
aaggcggaagagccgaaggccgagaccaagcccgagcagcccaaggccgagaccaagccc
gagcagcccaaggccgagaccaagcccgagcagcccaaggccgagaccaagcccgagcag
cccaaggccgagaccaagcccgagcagcccaaggccgacgccaaggcggaacagccgaag
gccgacgccaaggcggagcagcccaaggccgacgccaaggcggaacagcccaaggccgag
atcaaggcggaagcgccgaaggccgagatcaaggcggaagagcccaaggcagacgctaaa
gccgaagcgcccaaggccgacgccaaggcggaagagcccaaggcagacgctaaagccgaa
gcgcccaaggcggacgccaaggccgagacgccgcgtcgtcgccgccgcgcccataacgac
ccgcgggaaatccgccgtcgtgaacaggaggccaagcgccaggacagccagcaaggctga
DBGET
integrated database retrieval system
