Halomonas halophila: QWG60_13320
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Entry
QWG60_13320 CDS
T09170
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hhao
Halomonas halophila
Pathway
hhao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QWG60_13320 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhao03019
]
QWG60_13320 (rnr)
03016 Transfer RNA biogenesis [BR:
hhao03016
]
QWG60_13320 (rnr)
Enzymes [BR:
hhao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
QWG60_13320 (rnr)
Messenger RNA biogenesis [BR:
hhao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QWG60_13320 (rnr)
Transfer RNA biogenesis [BR:
hhao03016
]
Prokaryotic type
tRNA degradation factors
QWG60_13320 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
RNA_pol_Rbc25
HTH_Crp_2
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
WJY06674
LinkDB
All DBs
Position
complement(2829446..2831830)
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AA seq
794 aa
AA seq
DB search
MNHWTLSDDLHASREAHKYDKPAPSREYLLARLEEYGKPITHEAMSEMLGLEDEDLQEAV
RRRLSAMERDGQVLRNRRGAYALIDKLDLIKGRVLGHRDGIGFLLRDDGKKPDLVLPPRQ
MRRVFHNDHVLVRISGRDRRGRDEATIVEVLARNTQNIVGVYRENTPEFGVLIPENPRIA
QEIIIPHNANGGARDGQVISADIVKQPATRVQPVGHVTEVMGERMDPGMEIDIAIRSYEI
PSEFPPEVQDQIAGMSAEVAEDDKAHRVDLRHLPLVTIDDESARDFDDAVCAWQTKSGSW
KLLVAIADVSHYVRPGSPLDQEAISRGNSVYFPGQVVPMLPELLSNGLCSLNPDVDRLAM
VCEMNISQKGAISRYRFYEAVFRSHARLTYNKVASILDDEDEQGDALREQYSELVKPLND
LHSLYKVLRGARDERGAIDFETTETAIVFNDERKIEKIVPRSRNDAHKIIEECMLAANVA
TARFLDKHDLPALYRIHERPSPERLDKLRLFLNELGLSLPGGDEPTPQDYQTLAETIRGR
EDADIIQTVMLRSMSQAVYSPQNEGHFGLAYPAYAHFTSPIRRYPDLLVHRAIRSVIRGP
RQTATVLREEGAPVEPPSKWCPYTFEQMLELGEHCSMTERRADDATRDVESWLKCEFMSD
KLGEVYSGTIASVTQFGIFVRLDEFFVEGLVHVTSLPSDYYHYEAEKHRLKGERSGMSYR
LGDGVSVQVARVDLDDRKIDFELADDQPRPQRKSRKRGGSQGKGSGQGGAQGQSSGDGEK
SGGNKRRRRGPRRR
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgaatcactggacgctcagcgacgatctgcacgccagccgcgaggcccacaagtacgac
aagccggcgcccagccgcgaatacctgctggcgcggctcgaggaatacggcaagccgatc
acccacgaggccatgagcgagatgctgggcctcgaggacgaggatctgcaggaggccgtg
cgccgccggctgtcggccatggagcgcgacggccaggtgctgcgcaatcgccgcggcgcc
tatgcgctgatcgacaagctcgacctgatcaagggccgggtactcggccaccgcgacggc
atcggcttcctgctgcgcgatgacggcaagaagcccgacctggtgctgccgccgcgccag
atgcgccgcgtgttccataacgaccacgtgctggtgcgcatcagcggccgcgaccgccgc
ggccgcgacgaggccaccatcgtcgaggtgctggcgcgcaatacccagaacatcgtcggc
gtctatcgcgagaacacccccgagttcggcgtgctgattcccgagaatccgcgcatcgcc
caggaaatcatcattccgcataacgccaacggcggtgcccgcgacggccaggtgatctcg
gccgacatcgtcaagcagccggccacccgcgtgcagccggtgggtcatgtcaccgaggtg
atgggcgagcggatggatccggggatggagatcgacatcgccatccgcagctacgagatc
ccgtccgagtttccgccggaggtgcaggaccagatcgccggcatgtccgccgaggtggcc
gaggacgacaaggcgcaccgcgtcgacctgcgccacctgccgctggtgaccatcgacgac
gagtccgcccgcgacttcgacgacgccgtctgcgcctggcagaccaagtccggcagctgg
aagctgctggtggccatcgccgacgtctcccactacgtgcgtcctggcagccccctggat
caggaggcgatcagccgcggcaactcggtgtatttcccgggtcaggtcgtgccgatgctg
ccggagctgctgtccaacggcctgtgctcgctgaacccggacgtcgaccgcctggcgatg
gtctgcgagatgaacatctcccagaagggcgccatcagccgctatcgtttctacgaggcg
gtgttccgttcccacgcacgcctgacctacaacaaggtcgcctcgatcctcgacgacgag
gacgagcagggcgacgcgctgcgtgagcagtacagcgagctggtcaagccgctgaacgac
ctgcactccctctacaaggtgctgcgcggtgcccgcgacgagcgcggcgccatcgacttc
gagaccaccgagacggcgatcgtcttcaacgacgagcgcaagatcgagaagatcgtgccg
cgttcgcgcaacgacgcccacaagatcatcgaggagtgcatgctggcggccaacgtcgcc
accgcgcgcttcctcgacaagcacgacctgccggcgctgtatcgcatccacgagcggccc
tcgccggagcgcctcgacaagctgcggctgttcctcaacgagctgggcctgtcgctgccc
ggtggcgacgagcccacgccccaggactaccagaccctggccgagaccatccgcggccgc
gaggacgccgacatcatccagacggtgatgctgcgctccatgagccaggcggtctactcg
ccccagaacgaggggcactttggcctggcctatccggcctatgcccacttcacctcgccg
atccgtcgctaccccgacctgctcgtgcaccgggcgatccgctcggtgatccgcgggccg
cgccagaccgcgaccgtgctgcgcgaggagggcgcaccggtggagccgccgagcaagtgg
tgcccctataccttcgagcagatgctcgaactgggcgagcactgctcgatgaccgagcgg
cgcgccgatgacgccacccgcgacgtcgagagctggctgaagtgcgagttcatgtccgac
aagctcggcgaggtctacagcggcaccatcgcctcggtgacccagttcggcatcttcgtg
cgcctcgacgagttcttcgtcgagggcctggtgcacgtcacctcgctgccctccgactac
taccactacgaggccgagaagcatcgcctcaagggcgagcgcagcggcatgagctatcgc
ctcggcgacggcgtttcggtgcaggtggcgcgggtcgacctggacgatcgcaagatcgac
ttcgagctggccgacgaccagcccaggccgcagcgcaagtcgcgcaagcgcggaggctcg
cagggcaagggtagtggtcagggcggcgcccagggccagtcctcgggcgacggcgagaag
agcggcggcaacaagcgtcgccgccgcggcccgcgtcgtcgctga
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