Halomonas halophila: QWG60_15470
Help
Entry
QWG60_15470 CDS
T09170
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hhao
Halomonas halophila
Pathway
hhao03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hhao00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QWG60_15470 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhao03021
]
QWG60_15470 (rpoB)
03400 DNA repair and recombination proteins [BR:
hhao03400
]
QWG60_15470 (rpoB)
Enzymes [BR:
hhao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QWG60_15470 (rpoB)
Transcription machinery [BR:
hhao03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QWG60_15470 (rpoB)
DNA repair and recombination proteins [BR:
hhao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QWG60_15470 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
CEP19
Motif
Other DBs
NCBI-ProteinID:
WJY07072
LinkDB
All DBs
Position
complement(3288473..3292552)
Genome browser
AA seq
1359 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPQVMDVPYLLAIQLDSYYDFLQQDRSPEERLDLGLHAAFRSV
FPIESFSGNAALEYVSYRFGTPAFDVKECQLRGVTYSAPLRVKVRLIIYDKDSSNKAIKD
IKEQEVYMGEIPLMTENGTFVVNGTERVIVSQLHRSPGVFFDHDKGKSHSSGKLLYSARV
IPYRGSWLDFEFDPKDNVFVRIDRRRKLPATVLLRALGMSAEEILDEFFDTSTFHIEKRG
FSVELVPSRLRGETATFDIKDGDGNVIVEEGRRVTQKHIRQLEKAGLERLEVPMDYLFGK
VLAKDQIDPNTGELICACNTAITPEVLETLGQAGLTRLETLYTNDLDCGPFVSDTLKLDT
TGSQLEALVEIYRMMRPGEPPTKEAAETLFNNLFFTEDRYDLSGVGRMKFNRRLRREQDE
GAGVLDQRDILDVLGELINIRNGFGDVDDIDHLGNRRIRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLATYSHTNSYGFLETPYRKVV
DGQVTDDVVHLSAIEEGNFVIAQASATVDEGGKLVDDLVQVRHRGETTFMRPEQVTLMDV
SPRQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERFVARDSGVC
AVARRGGTIDSVDAKRIVVRVNEDEIIGGEAGVDIYNLTKYLRSNQNTCQNQRPIVRPGD
SVASGDILADGPSVDMGDLALGQNMRIAFMPWNGYNFEDSILLSERAVQEDRFTTIHIQE
LTCVSRDTKLGAEEITSDIPNVGESALGKLDEAGVVYIGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRAPTGMKGTVIDVQVFTRDGVEKDSRALSIEQQQLDE
VRKDLQETYRIAEDATFERLQRTLVGQPVNGGPKLKKGDVLSDEYLEELPRQQWFKLRMQ
DENLNELLAQADEQLETRRKEMDERFEDKKRKLTQGDDLAPGVLKIVKVYLAIKRRLQPG
DKMAGRHGNKGVISAIMPVEDMPFDDNGEPIDVVLNPLGVPSRMNVGQILETHLGMAARG
LGVKIEHMLRDARDQQVSQIREFLGKVYNTESSTRVEDIDSLSDDEVIALAKNLKAGVPM
ATPVFDGAREHEIKHLLTLADLPDSGQTTLYDGRTGDAFDRPVTVGYMYMLKLNHLVDDK
MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGRT
KMYKSIVDGDHTMQAGMPESFNVLVKEIRSLGIDIELES
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgcatccgcaaggatttcggcaaactgccccaa
gtgatggatgtgccttacctgctggccatccagcttgattcctattacgactttctccag
caggatcgctcacccgaagaacgcctcgacctcggcctgcatgccgccttccggtcggtc
tttccgatcgagagcttctccggcaatgctgcgctggaatacgtcagctaccgtttcggc
actccggccttcgacgtcaaggagtgccagctgcgtggcgtcacctattcggctcccctg
cgcgtcaaggtccgtctgatcatctacgacaaggattcgtcgaacaaggcgatcaaggac
atcaaggagcaggaagtctacatgggggaaatccccctgatgaccgagaacggtaccttc
gtggtgaacggtaccgagcgcgtcatcgtttcccagctgcaccgctccccgggcgtgttc
ttcgatcacgacaagggcaagagccactcctccggcaagttgctgtattccgctcgggtg
attccctaccgcggttcctggctggacttcgagttcgatcccaaggacaacgtcttcgtg
cgcatcgaccgtcgccgcaagctgccggccacggtgctgctgcgcgcgctgggcatgagc
gccgaggagatcctcgacgagttcttcgacaccagcaccttccacatcgagaagcgcggc
ttctccgtggaactggtgccgtctcgcctgcgcggcgagaccgcgaccttcgacatcaag
gatggtgacggcaacgtcatcgtcgaggaaggtcgtcgcgtcacccagaagcacatccgc
cagctggagaaggccggcctcgagcgtctcgaggtgccgatggactacctgttcggcaag
gtgctggccaaggaccagatcgatcccaacaccggcgagctgatctgcgcctgcaacacc
gcgatcactccggaagtgctggaaaccctgggccaggccggtctgacccgcctggagacc
ctgtacaccaacgatctggattgcggtccgttcgtctccgacaccctcaagctggacacc
accggttcccagctcgaggcgctggtcgagatctaccgcatgatgcgccccggcgagccg
cccaccaaggaggccgccgagacgctgttcaacaacctgttcttcaccgaggaccgctac
gacctgtccggcgtcggtcgcatgaagttcaaccgtcgtctgcgccgcgagcaggacgag
ggcgccggcgttctcgatcagcgcgatatcctcgacgtgctcggcgagctgatcaacatc
cgtaacggcttcggcgacgtcgatgacatcgaccacctgggcaaccgtcgcatccgctgc
gtcggcgagatggccgagaaccagttccgcgtcggcctggtgcgcgtcgagcgtgcggtc
aaggaacgcctctccatggcggagagcgaaggcctgatgccgcaggacctgatcaacgcc
aagccggtggccgcggcggtgaaggagttcttcggctcctcccagctgtcgcagttcatg
gaccagaacaacccgctgtccgaggtgacgcacaagcgtcgcgtctccgccctcggcccg
ggtggtctgacccgcgagcgtgccggcttcgaggtgcgtgacgttcacgccacccactac
ggccgcctttgcccgatcgagacccctgagggtccgaacatcggtctgatcaactcgctg
gccacctacagccacaccaacagctacggcttcctcgagacgccgtaccgcaaggtcgtg
gacggtcaggtgaccgacgacgtggtgcacctctccgcgatcgaggagggcaacttcgtc
atcgcccaggcctcggctaccgtggacgagggcggcaagctggtcgacgacctggtgcag
gtccgccatcgcggcgagaccaccttcatgcgccccgagcaggtcaccctgatggacgtc
tcgccgcgtcaggtggtgtccgtggccgcggccttgatcccgttcctcgagcacgatgac
gccaaccgcgccctgatgggggcgaacatgcagcgtcaggccgtgccgaccctgcgcgcc
gacaagccgctggtcggtaccggcatggagcgtttcgtggcccgcgactccggcgtctgc
gccgtggcccgtcgtggcggcaccatcgactccgtcgacgccaagcgcatcgtggtgcgg
gtcaacgaggacgagatcatcggcggcgaagccggcgtcgatatctacaacctgaccaag
tacctgcgttccaaccagaacacctgccagaaccagcgtccgatcgtgcgccccggcgac
agcgtggccagcggcgacatcctggccgacggcccgtccgtcgacatgggtgacctggcc
ctgggccagaacatgcgcatcgccttcatgccgtggaacggctacaacttcgaggactcc
atcctgctctccgagcgggccgtccaggaagaccgtttcaccaccatccacatccaggag
ctgacctgcgtctcccgcgacaccaagctgggcgcggaggagatcacctccgacattccg
aacgtcggcgagtccgcgctcggcaagctggatgaggctggcgtcgtctacatcggtgcc
gaggtcggcgcgggcgacatcctggtcggcaaggtcacgcccaagggcgagacccagctg
accccggaggagaagctgctgcgtgcgatcttcggtgagaaggcgtccgacgtgaaggac
acctccctgcgtgccccgaccggcatgaagggcaccgtcatcgacgtgcaggtgttcacc
cgcgacggcgtggagaaggactcccgtgcgctctccatcgagcagcaacagctcgacgag
gtgcgcaaggatctccaggagacctatcgcatcgccgaggacgcgaccttcgagcgtctg
cagcgcaccctggtcggccagccggtcaacggggggccgaagctcaagaagggcgacgtg
ctcagcgacgagtacctcgaggagctgccgcgtcagcagtggttcaagctgcgcatgcag
gacgagaacctcaacgagctgctggcccaggccgacgagcagctggagacccgtcgcaag
gagatggacgagcgcttcgaggacaagaagcgcaagctcacccagggcgacgaccttgcg
ccgggcgtgctgaagatcgtcaaggtctacctcgccatcaagcgtcgcctgcagccgggc
gacaagatggccggccgtcacggtaacaagggtgtcatctcggccatcatgccggtcgag
gacatgccgttcgacgacaacggcgagccgatcgacgtggtgctgaacccgctgggcgtg
ccgtcgcgcatgaacgtcggtcagatcctcgagacccacctgggcatggccgcccgcggc
ctcggcgtgaagatcgagcacatgctgcgcgacgcccgcgaccagcaggtctcgcagatc
cgcgagttcctgggcaaggtctacaataccgagtcgagcacccgggtcgaggacatcgat
tcgctctccgacgacgaggtgatcgcgctggcgaagaacctcaaggcgggcgtgcccatg
gccacgccggtcttcgacggtgctcgcgagcatgagatcaagcacctgctgacgctggcc
gacctgccggactccggccagacgaccctctacgacggtcgtaccggcgatgccttcgat
cgcccggtcaccgtgggttacatgtacatgctgaagctcaaccacctggtggatgacaag
atgcacgcgcgttccaccggttcctactccctggtgacccagcagccgctgggcggcaag
gcgcagttcggtggtcagcgcttcggggaaatggaggtctgggccctggaagcctatggc
gccgcctacacccttcaggaaatgctcaccgtcaagtccgacgacgtggaaggccgcacc
aagatgtacaagagcatcgtggatggcgaccacaccatgcaggcgggcatgccggaatcc
ttcaacgtgctggtgaaggaaatccgctcgctgggcatcgatatcgaactggagagctga
DBGET
integrated database retrieval system
