Harpia harpyja (harpy eagle): 128135089
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Entry
128135089 CDS
T10541
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
hhar Harpia harpyja (harpy eagle)
Pathway
hhar04382
Cornified envelope formation
hhar04510
Focal adhesion
hhar04512
ECM-receptor interaction
hhar04518
Integrin signaling
hhar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hhar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128135089 (COL4A1)
04518 Integrin signaling
128135089 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128135089 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128135089 (COL4A1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128135089 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hhar04147
]
128135089 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
hhar00536
]
128135089 (COL4A1)
Exosome [BR:
hhar04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128135089 (COL4A1)
Glycosaminoglycan binding proteins [BR:
hhar00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128135089 (COL4A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128135089
NCBI-ProteinID:
XP_052629554
LinkDB
All DBs
Position
22:21283604..21411376
Genome browser
AA seq
1679 aa
AA seq
DB search
MSIFPPSLPGGSPQGFLPPDGRPCKAEKRPHGCSGCGKCDCSGVKGQKGERGLPGLQGVI
GFPGMQGPEGPPGPPGLKGDTGEPGLPGTKGTRGPPGASGFPGNPGLPGIPGQDGPPGPP
GIPGCNGTKGERGPVGPPGLPGLTGSIGPPGPPGMKGDPGEVIGLLPPSVLKGDKGFPGQ
PGLPGPPGTPGFQGPMGPQGPPGDPGPPGPPGLPGEKGYMGLGFQGPKGEKGEQGVRGPP
GPPGPAPHMKEKGSEIIRGEKGDPGEKGEQGAPGLPGSGFKGEKGEPGKPGPRGKPGKDG
EPGPKGEPGLPGGFGIPGRPGEPGTKGDKGERGFPGPPGRVIDPGPVDTFGEKGEPGVSG
LPGLKGQKGEKGFPGIQGMPGPPGRPLPDRVGSPGVPGERGEKGEKGSPGFSLPGPPGRD
GFPGSPGLPGPPGPPGKTDGIDQCQQGEPGAPGSPGLPGRDGFPGEMGEKGDKGESCALC
DKVGPPGLPGPQGPPGPAGFPGQSGFKGDRGLPGLDGLPGVPGPPGTPGLMGSPGAKGEP
GDFSYDSILKGEKGEPGFPGQPGTPGREGRPGKDGLPGLQGPKGTSGTAGLKGERGPPGQ
PGFPGVRGERGFPGPPGIGAAGLPGDKGDRGFAGTPGSQGLPGAKGEAGRTVPLPGPPGA
DGLPGPPGFPGPQGDKGNPGLPGRPGPPGEKGAVGQPGIGFPGPPGPKGFQGQSGSPGLP
GTPGSRGLDGLPGVPGLQGQKGEPGVGLPGPKGLPGPPGPAGIPGEKGNPGLPGLRGEQG
FPGVPGQQGFRGDPGLPGLQGSQGPPGAPGLGPQGLPGPAGQPGPQGPPGFPGIKGERGF
PGIPGLDMPGPKGDKGSQGQPGVPGSVGLPGLPGPQGTIGQKGSAGAKGEMGVMGTPGLP
GTPGPVGDRGLPGEKGSQGFKGIAGPQGDPGVKGDKGEAGLPGKPGTMDTMDMVSLKGQK
GDPGEKGDHGATGEKGLRGEYGEPGIPGRDGEPGTPGHPGPKGDQGPPGFPGDPGIPGQK
GSVGEMGLPGTPGEKGLPGVPGSPGTPGFPGQKGEKGDKGAPGFPGIGFPGSPGEKGEPG
RTGSPGLSGDKGEKGSAGIPGMPGAPGPKGSPGMAGFPGNPGRQGEKGEKGLPGLSGIPG
LKGEPGEPGVPGPAGSIGQKGEPGYDGIPGAAGAKGEQGIPGRGLPGFPGAKGDKGAKGD
VGFPGSPGSPGIPGLKGEPGYAGPPGPKGSQGLPGLPGSAIEGPKGDRGPQGQPGLPGLP
GPTGPPGPPGLKGAKGEQGSNGWPGTPGGPGVKGDPGFQGLPGSPGLPGDIGQKGDLGPP
GVPGVPGPKGSPGFPGLKGERGDQGLPGSKGLQGPPGPPGAFQLVKGDPGLPGPVGPVGL
KGFPGLPGPKGQQGVTGPSGIPGPPGSPGFDGKPGQKGEVGPYGPPGPRGFPGPPGPEGL
PGAMGPPGAPSVAHGFLVTRHSQTTEEPSCPFGTRLIYHGYSLLYVQGNERAHGQDLGTA
GSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGDNIRPFISRCSV
CEAPAMVIAVHSQTIQIPQCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRS
APFIECHGRGTCNYYANAYSFWLATIERNEMFKKPTPSTLKAGDLRSNVSRCQVCMRKT
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atgtccattttccctccttccctgcccgggggctcgcctcagggcttcctcccgccggac
ggccgcccctgcaaggcagagaagcgcccgcacggttgttccggttgtggaaaatgtgac
tgcagtggcgtaaaagggcaaaagggagaaagaggcttgccgggactacagggtgtgatt
gggtttcctggaatgcaaggacctgaaggtccccctgggccaccagggcttaagggtgat
actggagaaccgggactgccaggaacaaagggaacaagaggccccccaggagcatcaggc
ttcccaggaaacccaggccttcctggcattcctggacaagatggccctcctggtccacct
ggcattccaggatgtaatggcacaaagggtgaaagaggtccagtaggtcccccaggttta
ccaggactgactgggagcataggacccccaggacctcctggaatgaagggagatccaggt
gaagtgattggtcttttacctcctagtgtgctaaaaggtgataaaggctttcctggccaa
cctggactacctggtccacctggaactccagggtttcagggaccaatgggtccacaaggg
cctccaggagatccaggtcccccagggccaccaggactcccaggcgagaagggctacatg
ggcttgggctttcagggtcccaaaggtgaaaagggagaacaaggggtaaggggcccccca
ggccccccaggaccagcaccacatatgaaggaaaaagggagtgaaatcataaggggagaa
aagggtgatccaggtgaaaagggtgaacagggagccccaggactgccgggttcaggtttc
aaaggagaaaagggtgaacctggaaagcctggtccacgtggaaagcctggaaaagatggt
gaaccaggaccaaaaggagaacccggtttgcctggtgggtttgggattccaggacgaccc
ggggagcctggtacgaagggtgacaaaggtgaacgaggttttccaggacctccaggaaga
gttatagatcctggaccagtagatacctttggtgaaaaaggagagcctggagtttcaggt
ttgcctggactgaaaggtcaaaaaggtgaaaaaggtttccctggtatacaaggaatgcca
ggacctccaggtcgaccacttccagacagggtaggatcacctggtgtccctggagagaga
ggtgaaaaaggtgaaaagggttctccgggattctctttacccggaccccctggaagagat
ggtttcccaggttccccagggttgccgggcccaccaggtcctccaggcaaaacagatgga
attgatcaatgccagcaaggagaacctggtgcaccaggtagtcctggacttccaggaaga
gatggatttccaggagagatgggagagaaaggtgacaaaggtgaatcctgtgccttatgt
gataaagtaggacctcctggacttccaggaccacaggggccaccaggtccagcaggtttt
ccaggacaatcaggtttcaagggtgacagaggcttacctggacttgatggccttccgggg
gtacctgggccccccggcactccaggacttatgggcagccctggggcaaaaggagaacca
ggagatttttcttatgattctatcctgaaaggtgaaaagggagaacctggtttcccagga
caaccaggtactcctggaagagaaggaagaccgggaaaagatggattgccaggtctccag
ggtccaaaaggaacatcgggtacggctggcttgaaaggagaacgcggtccccctggccaa
cctggattccctggagtacgtggtgaaagaggttttcctggccctcctgggataggcgct
gcagggttacctggtgacaaaggagacagaggctttgctggaaccccaggttcacaaggc
cttccaggagcaaaaggcgaagcaggacgaactgtaccactccctggacctcctggggcg
gatggccttcctgggccacctggtttccctggaccccaaggtgacaaagggaatcctggg
cttccaggtagacccggcccgccaggagaaaaaggtgctgttgggcagccaggcataggg
ttccctggacctccaggacccaaaggtttccaaggtcagtctggctctcctggtctgccg
gggactccgggaagccgtggcctggatggtttgccaggtgtaccaggtttacaaggtcaa
aaaggtgaacctggtgtgggtctccctggccctaaggggttgccaggccccccaggccca
gctggcatccctggagaaaagggaaatccaggactgcctggcttacgtggagagcaaggc
ttcccgggcgtcccgggacagcaaggattcagaggcgaccccggcctcccaggactgcaa
ggctcgcagggccctccgggcgcaccggggctgggcccccagggattgccgggacccgct
gggcagccgggaccccagggaccgccaggatttcctggaataaaaggagaaaggggcttc
cctggtatcccaggtctagatatgccaggaccaaaaggggataaaggtagccagggccag
ccgggagtaccagggtctgtggggttacccggcctgccgggtccgcaggggaccattgga
cagaaagggtcggcaggagccaaaggagaaatgggagttatgggaactcctggattgcca
ggaactcctggaccagttggagatcgagggttgcctggtgaaaaaggtagccaaggtttc
aaaggcatagctggacctcagggtgatcctggtgtcaaaggagataaaggtgaagctggt
ctcccaggaaaacctggaacgatggacactatggacatggttagtctcaaaggccaaaag
ggagatccaggagaaaaaggggaccatggagcaacaggagaaaaagggttacgtggggaa
tatggagaaccaggaattccagggagggatggtgaacctggtactccaggacatccagga
ccaaaaggtgatcagggccccccagggttcccaggggatccaggaattccaggacaaaaa
ggatcggttggtgaaatgggtttgccaggaacacctggagaaaagggtctgccgggagta
ccaggttcaccaggcacaccagggtttcctgggcaaaaaggtgaaaaaggagacaaagga
gcaccaggttttcctggaattggctttccagggtctcctggtgagaagggagaaccagga
agaacgggtagtccaggtttatctggagataagggtgaaaagggtagtgcaggaattcct
ggaatgccgggtgccccaggtcccaaaggatcccctggcatggcaggatttccaggcaac
cctggccgccagggagaaaagggtgaaaaaggacttcctggcttaagtggcattccaggt
ttaaaaggagaaccaggtgaacctggcgttccgggtcctgctggttccattggacagaag
ggtgaaccaggttatgatgggattccaggtgcagctggtgcaaagggtgaacaaggtatt
ccaggtagaggacttccaggatttcccggtgcaaagggagataaaggtgcgaaaggtgat
gtgggtttcccgggatcccccggaagtccggggatcccaggcctgaaaggagaaccggga
tatgcgggtccgccaggccctaagggcagccaaggtcttcctggactaccaggaagtgca
attgagggccctaaaggagacagaggaccccaaggccagcctggccttccaggtttacca
ggtcccacagggccaccaggacccccaggtctgaaaggggccaaaggagagcaggggagc
aatggctggcctgggactcctgggggtccgggagtcaaaggtgatccgggtttccagggg
ctgccaggtagtcctggtttaccaggagatattggtcaaaagggtgatctgggacctcca
ggcgttccaggcgttccaggtccaaaaggatcccctggcttcccaggccttaagggtgag
cgaggtgaccaaggtcttcctggatctaaaggtttacaaggcccaccaggcccgccaggt
gcttttcagcttgttaaaggggatcctggcttacctggccctgtaggaccagttggtctc
aaaggattcccaggacttccaggtcccaaaggacagcaaggggtgacaggaccttcaggt
atacctggaccacctggtagtccagggtttgatggcaaacctgggcaaaaaggagaagtt
ggtccttatggtcctccagggcccagaggattccctggtccacctggccctgaaggtttg
cctggggctatgggcccaccaggtgcaccatctgttgctcatggcttccttgttaccaga
cacagtcaaaccactgaagaaccatcatgtccatttggaacaaggctgatttaccatggc
tactccttgctttatgtacaaggcaatgaaagagcacatggccaagatctgggcacagca
ggaagctgtcttcgtaaatttagtaccatgcctttcttattctgcaatatcaacaatgta
tgtaactttgcatcaaggaatgactattcttactggctgtccactcctgaacccatgcca
atgagtatggctcctatcactggtgataatatcagaccattcatcagcagatgctctgtg
tgtgaagctcctgctatggtaatagccgttcacagccaaacaattcaaataccacagtgt
cctgaaggctggagttcactttggattggttactcctttgtcatgcacaccagtgctggt
gcggagggctctggccaggccctggcatcccctggttcctgcctagaggagtttcgcagc
gctcccttcattgaatgccatggccggggcacctgcaattattatgcaaatgcttacagc
ttctggcttgctactatagagaggaatgagatgttcaagaaaccgactccctcaactttg
aaagcaggggatctgcgctcaaatgttagccgttgtcaagtctgtatgagaaaaacataa
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