Harpia harpyja (harpy eagle): 128135836
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Entry
128135836 CDS
T10541
Symbol
DDX39B
Name
(RefSeq) LOW QUALITY PROTEIN: spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
hhar Harpia harpyja (harpy eagle)
Pathway
hhar03013
Nucleocytoplasmic transport
hhar03015
mRNA surveillance pathway
hhar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hhar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128135836 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
128135836 (DDX39B)
03015 mRNA surveillance pathway
128135836 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhar03019
]
128135836 (DDX39B)
03041 Spliceosome [BR:
hhar03041
]
128135836 (DDX39B)
Enzymes [BR:
hhar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128135836 (DDX39B)
Messenger RNA biogenesis [BR:
hhar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
128135836 (DDX39B)
Spliceosome [BR:
hhar03041
]
Complex C
Other components
EJC/TREX
128135836 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
128135836 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
128135836
NCBI-ProteinID:
XP_052630879
LinkDB
All DBs
Position
25:complement(22966..29763)
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVENAAGADGAEAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPNIVVGDSGPYPALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaacgacgtggacaacgagctgctggattatgaggacgacgaggtggagaac
gcggcgggggccgacggggccgaggcgccgcccaagaaggacgtgaagggctcctacgtc
tccatccacagctccggcttccgcgatttcctcctcaaacctgagctgcttcgcgccatt
gtcgactgcggcttcgagcacccctccgaagtgcagcacgagtgcatcccgcaggccatc
ctgggcatggacgtgctctgccaggctaaatccggcatgggcaagacagccgtcttcgtc
ctggccaccctgcagcagctggagcctgtcacggggcaggtgtcagtgctggtgatgtgt
cacacgcgggagctggctttccaaatcagtaaggagtacgagcgattttccaagtacatg
cccagcgttaaggtggcggtgttcttcggggggctgtcgatcaagaaggatgaggaggtg
ctgaagaagaactgccccaacatcgtggtgggggactccgggccgtatcctgctctggcc
cgcaacaagagcctcaacctgaagcacatcaagcacttcatcctggacgagtgcgacaag
atgctcgagcagctcgacatgcgtcgggacgtccaggagatcttccgcatgaccccgcac
gaaaagcaggtcatgatgttcagcgccactctcagcaaggaaatccgccccgtctgccgc
aaattcatgcaagacccgatggagatcttcgtggacgacgagacgaagctgacgctgcac
gggctgcagcagtactacgtcaagctgaaggacaacgagaagaaccgcaagctcttcgac
ctgctggatgtcctcgagttcaaccaggtggtgatcttcgtcaagtcggtgcagcgctgc
atcgccctggcccagctgctggtggagcagaacttcccggccatcgccatccaccgcggc
atgccccaggaggaacggctgtcacggtaccagcagttcaaggatttccaacgccgcatc
ttggtggccaccaacctctttgggcgcgggatggacatcgagcgggtcaacatcgccttc
aactacgacatgcccgaggactccgacacctacctgcaccgggtggcgcgggcggggcgt
ttcggcaccaaggggctggccatcaccttcgtgtcggacgagaacgacgccaagatcctc
aacgacgtccaggatcgcttcgaggtcaacatcagcgagctgcccgacgagatcgacatc
tcctcctacatcgagcagacccgataa
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