Harpia harpyja (harpy eagle): 128137580
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Entry
128137580 CDS
T10541
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
hhar Harpia harpyja (harpy eagle)
Pathway
hhar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128137580 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhar03019
]
128137580 (MTREX)
03041 Spliceosome [BR:
hhar03041
]
128137580 (MTREX)
03009 Ribosome biogenesis [BR:
hhar03009
]
128137580 (MTREX)
03016 Transfer RNA biogenesis [BR:
hhar03016
]
128137580 (MTREX)
Enzymes [BR:
hhar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128137580 (MTREX)
Messenger RNA biogenesis [BR:
hhar03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
128137580 (MTREX)
Spliceosome [BR:
hhar03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
128137580 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
128137580 (MTREX)
Ribosome biogenesis [BR:
hhar03009
]
Eukaryotic type
Pre-60S particles
Helicases
128137580 (MTREX)
Transfer RNA biogenesis [BR:
hhar03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
128137580 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
128137580
NCBI-ProteinID:
XP_052634611
LinkDB
All DBs
Position
Z:complement(97580277..97631354)
Genome browser
AA seq
1035 aa
AA seq
DB search
MADAFGDELFSVFEGDSAAAAASGAKKSKAGATEGARRPGRQLEEKSSVAVAGKPKREIE
VDSTEDAVLGKKPKLEDVVSEDVNLADLMPQVKVQAVETVEGCTHEVALPADEVFTGLKP
RTGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALRDKQRVIF
TSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVA
WVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVI
YTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGG
MKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNA
IDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM
GINMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTI
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNN
LEGQYNKIAIPNEENVVIYYKIRQQLAKLGKEIEEYVHKPKYCLPFLQPGRLVKVKNEGD
DFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPARPDEKGEMQ
VVPVLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKD
QGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYKLCEKKAQIAIDIKAAKRELKKARTVLQ
MDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATA
LLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLM
DVVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgttcggggacgagctcttcagcgtgtttgagggggactcggccgccgcc
gccgcctccggcgccaagaagagcaaagcgggcgccaccgaaggcgccaggagaccggga
agacaactggaggaaaaatcttcagtagctgtggcagggaagcccaaaagggaaatcgag
gtcgatagcactgaagatgccgttttgggaaagaaaccaaaattggaagacgttgtatca
gaagatgttaatcttgcagacctgatgcctcaagtaaaggtgcaagctgtggaaactgtt
gaaggttgtacacatgaggttgcacttccagcagatgaagtcttcacaggtctgaagcca
agaactggaaaagctgcaaaagaatatccatttattcttgatgcctttcagagagaagct
attctttgtgtagataataaccagtctgtgttagtgtcagctcatacatcagctggtaaa
actgtttgtgcagagtatgcaattgccttggctttgagggataaacagcgtgtgatattt
acgagtccaattaaagctttgagtaatcagaagtaccgtgagatgtacgaagaatttcag
gatgttggtttgatgactggggatgtcaccattaatcctacagcttcttgtctggtaatg
acaaccgagattttgagaagtatgctctacagaggttctgaggttatgcgagaagtcgca
tgggttatttttgatgaaatccactacatgagagattcagaacgtggtgtggtttgggaa
gagacaattattttgctccctgacaatgttcattatgtgttcctttctgcaactattcca
aatgcccgtcagtttgccgaatggatctgccatcttcacaaacagccttgtcatgtgatt
tacaccgactatcgacccactccactgcagcattatatattcccagcaggaggagatgga
ctccatctggttgttgatgaaaatggagatttcagagaagataattttaatacagcaatg
caagtgcttagagatgcaggagacttagcaaaaggggaccagaaaggcaggaaaggagga
atgaaaggtccttcaaatgtttttaagattgtgaagatgatcatggaaaggaatttccaa
cctgtgattattttcagcttcagtaagaaagactgcgaagcctatgcacttcagatgaca
aagttagatttcaatacagatgaagaaaaaaagatggtagaagaagtgttcaataatgca
attgattgtttgtcagatgaagacaaaaagcttcctcaggttgagcatgtgcttcctctt
ctgaagcgaggaattggtatccatcacggtggtctacttcctatcttaaaagaaaccata
gaaatccttttctctgagggcctaataaaggccttatttgcaacggagacttttgctatg
ggaattaatatgccagccaggactgtactatttacgagtgccagcaaatttgatggaaaa
gatttccgatggatatcctcaggtgaatacattcaaatgtcaggtcgtgcaggacgccga
ggtatggatgacagaggaatagtaattcttatggtggatgaaaaaatgagtccaacaatt
ggcaagcagcttttgaagggttcagctgatcctttaaacagtgcattccacctgacatac
aacatggtattgaacctgcttcgagtagaggaaattaatcctgaatacatgttagaaaaa
tccttctatcagttccagcattacagaactattccagaaatagtagaaagagtgaataat
ttggaaggacagtacaacaaaatagcaattcccaatgaagaaaatgtggtcatatactac
aaaatccgacagcagcttgcaaaactgggtaaagagattgaagaatatgttcacaaacca
aagtattgcttgccatttctacagccaggaagactggtaaaggtgaagaatgaaggtgat
gactttggatggggagtggttgttaatttctctaagaaatcaaatgttaagccaaattct
ggtgaattggacccattatatgtagttgaagtgctactgcactgcagcaaagagagtttg
aaaaattctgctactgaggctgcaaagccagccagacctgatgagaaaggcgagatgcag
gttgttcctgttttggtacacctcctctcagctatcagcagtgtccgactttacataccg
aaagacctgaggcctattgacaacaggcaaagtgtgttaaaatctatacaggaagtacag
aagcgatttcctgatggagtaccattactagaccctattgatgacatgggcatcaaagat
caaggactgaaaaaagtaatccaaaaagtagaggcatttgagcataggatgtattcacat
cctcttcacaatgatcccaacttggaaactgtatacaaactttgtgaaaaaaaagcacag
attgctatagacattaaagcagcaaagcgagaactgaaaaaagccagaactgtcttacaa
atggatgaactcaaatgccgcaagcgtgttttgagaagactggggtttgccacgtcttca
gatgttattgagatgaaaggacgggtcgcttgtgaaatcagcagtgctgatgaactactc
ttgacagaaatgatgttcaatggtctcttcaatgacttatctgcagaacaggcaactgca
ctactaagctgtttcgtatttcaagagaactccagtgaaatgccaaaattgacagagcag
ttggcaggaccacttcggcaaatgcaggagtgtgcaaaaaggattgccaaggtgtcagca
gaagcaaaactggaaattgatgaagaaaattacttaaattctttcagacccaacctgatg
gatgttgtgtatacatgggcaaatggagctaactttgctcacatctgcaaaatgactgat
gtctttgaagggagcataattcggtgcatgagaaggctagaagaattgcttcggcagatg
tgccaggctgcaaaagccattggaaacacagagttggaaaataagtttgcagaggggatt
acaaaaatcaagagagatattgtgtttgctgcaagcctttacctgtaa
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