Harpia harpyja (harpy eagle): 128140658
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Entry
128140658 CDS
T10541
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
hhar Harpia harpyja (harpy eagle)
Pathway
hhar04120
Ubiquitin mediated proteolysis
hhar04137
Mitophagy - animal
hhar04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hhar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
128140658 (PRKN)
04120 Ubiquitin mediated proteolysis
128140658 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
128140658 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hhar04131
]
128140658 (PRKN)
04121 Ubiquitin system [BR:
hhar04121
]
128140658 (PRKN)
03029 Mitochondrial biogenesis [BR:
hhar03029
]
128140658 (PRKN)
Enzymes [BR:
hhar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
128140658 (PRKN)
Membrane trafficking [BR:
hhar04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
128140658 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
128140658 (PRKN)
Xenophagy
Other xenophagy associated proteins
128140658 (PRKN)
Ubiquitin system [BR:
hhar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
128140658 (PRKN)
Mitochondrial biogenesis [BR:
hhar03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
128140658 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
ubiquitin
IBR_1
IBR
Rad60-SLD
Dsc3_N
Rad60-SLD_2
Motif
Other DBs
NCBI-GeneID:
128140658
NCBI-ProteinID:
XP_052640817
LinkDB
All DBs
Position
4:complement(75989681..76792860)
Genome browser
AA seq
463 aa
AA seq
DB search
MIVFVRFNSSHGFPVEVGSDASILQLKEVVAQRQGVPSDQLRVIFAGRELSNDLTLQNCD
LAQQSIVHIVQSPQKNSQNKDETEDNCAGGIPKALEREPESLTRIDLSTSILPSLSAGLA
VILDTTKSISLPSEKSGAASYNSFFVFCKNFCQAVKPGKLRVRCSVCKQGTLTLARGPSC
WDDVLIPNRIRGVCQSPRCNGNIAEFYFKCGAHPTTDSETSVALNLVTTNSRCITCITCT
DIRSPVLVFQCVHRHVICLDCFHLYCVTMLNDRQFIHDPELGYSLPCVAGCPDSLIKELH
HFRILGEEQYNRYQRYGAEECVLQMGGVLCPTPGCGAGLLPEPGVRKIVCEPGNGMGCGF
VFCRECKEEYHEGECSSLLSMQGAMAQKGYVVDERAAMQARWEEASRETIKKTTKPCPSC
NIPVEKNGGCMHMKCPRPQCRFEWCWNCGLEWNRTCMGDHWFD
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgatagtgtttgtcaggttcaactccagccatggcttcccggtggaggttggttcggat
gccagcatcctccagctgaaggaggtggttgcccagcgacagggagttccatctgaccag
ctgcgggtgatttttgcagggagggagctcagcaatgacttgacactgcagaactgtgac
ctggcccagcagagtatcgttcatatagttcagagtccacagaagaacagtcagaacaag
gatgagacagaagataactgtgctggaggtattccaaaagccttggaaagagaacctgaa
agtctaactcgcatagatctcagcaccagcatcctcccatcactctctgcaggtttggct
gttattctggatactacaaaaagcatttctcttccctctgaaaaatcaggtgcagctagt
tacaacagtttttttgttttttgcaaaaatttctgccaagctgtgaaacccgggaaactg
agggtccgctgcagtgtgtgtaaacaaggaacactgacgttggcaagaggtccatcttgc
tgggatgatgtgctgattcccaacagaataagaggtgtttgccagtccccaaggtgcaat
ggaaacatagcggagttttactttaaatgtggagcacacccaacgactgacagtgaaaca
tctgtggctttgaacctcgttacaacaaacagtcgctgtatcacatgtatcacatgcaca
gatattaggagtcctgtgcttgtgttccagtgcgtgcatcgccatgtcatttgcctggac
tgtttccatttgtactgtgtgactatgctgaatgaccgtcagttcatccatgacccggag
cttggctattccctcccttgcgtagctggctgtccagactccttgattaaagagcttcat
cacttcaggattctgggagaagaacagtacaaccgttaccagcgctatggggcggaggaa
tgcgtgctgcagatgggaggagtgctgtgtccaactcctggctgtggagcaggtttgctt
cctgaacccggagtgaggaaaattgtatgtgaaccgggcaacggaatgggctgtgggttt
gtgttctgccgtgaatgtaaagaagaataccatgaaggggaatgtagctctctcctcagc
atgcagggagccatggcccagaagggatacgtagttgatgaacgtgcagccatgcaagct
cgatgggaagaggcatctagagaaacaatcaagaagacaaccaagccatgccccagctgc
aatattccagtagaaaaaaatggtggctgcatgcacatgaaatgtcctcgcccgcagtgc
agatttgagtggtgctggaactgtggcctggagtggaacagaacctgcatgggagatcac
tggtttgactag
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