Harpia harpyja (harpy eagle): 128141948
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Entry
128141948 CDS
T10541
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
hhar Harpia harpyja (harpy eagle)
Pathway
hhar03015
mRNA surveillance pathway
hhar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128141948 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
128141948 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhar03019
]
128141948 (PABPC1)
03041 Spliceosome [BR:
hhar03041
]
128141948 (PABPC1)
Messenger RNA biogenesis [BR:
hhar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
128141948 (PABPC1)
mRNA cycle factors
Stress granule specific factors
128141948 (PABPC1)
Spliceosome [BR:
hhar03041
]
Complex C
Other components
Complex C specific factors
128141948 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_10
RRM_5
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
128141948
NCBI-ProteinID:
XP_052643350
LinkDB
All DBs
Position
5:complement(56112874..56130125)
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AA seq
637 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPTNQLAQLARPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMST
QRVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHV
QGQEPLTASMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLES
PESLRSKVDEAVAVLQAHQAKEAAQKAVNNPTGVPSV
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcctccctctacgtgggggacctgcacccc
gacgtgacggaggccatgctctacgagaagttcagccccgccgggcccatcctttccatc
cgcgtctgcagggacatgatcacccgccggtcgctcggctacgcctatgtcaacttccag
cagcccgccgacgctgaacgagctttggataccatgaactttgatgtcattaaaggcaaa
ccagtgcgcatcatgtggtctcagcgcgatccgtctctacgcaaaagtggtgtaggaaac
attttcatcaaaaacttggacaaatcaattgataacaaagctttatatgacacattttct
gcttttggaaacatcctatcttgtaaggtggtatgtgatgaaaatggatccaagggttat
ggatttgtacattttgagacacaagaagctgcagaaagagctattgaaaaaatgaatggt
atgctgcttaatgaccgcaaagtatttgttggaaggtttaaatcccgcaaggaacgtgag
gcagagcttggggccagggcaaaggaatttaccaatgtttacatcaagaattttggagaa
gacatggatgatgagagacttaaggaactctttggcaagtttggtcctgccctaagtgtg
aaagttatgactgatgagagcggaaaatccaaaggctttggcttcgttagttttgaaaga
catgaagatgcccaaaaagctgtagatgagatgaatgggaaagagctcaatgggaaacaa
atctatgttggccgggctcagaaaaaggtggaaagacagacggagctgaagcgcaagttt
gaacaaatgaagcaggacaggatcaccagataccagggtgtaaacctttacgtgaaaaat
cttgatgatgggattgatgatgagcgtcttcgaaaagaattctccccatttggtacaatc
actagtgcaaaggtcatgatggaaggtggccgcagcaaaggatttggatttgtatgcttt
tcatcaccagaagaagccaccaaagctgtcacagaaatgaatggtagaattgtggctact
aaaccattatatgtagctctagcccagcgtaaagaagagcgccaagctcatctcaccaac
cagtatatgcagagaatggcaagtgtaagagcagtacctaatcctgtaatcaacccttac
caaccagcacctccttcaggttacttcatggcagctatcccacagactcagaaccgtgct
gcatactatcctactaatcaacttgctcaacttgctagacctagtcctcgctggactgct
cagggtgccagacctcatccattccaaaacatgcctggtgctatccgcccagcagcaccc
agaccaccatttagtaccatgagaccagcttcttcacaagttccacgagtcatgtcaaca
caacgtgttgctaatacatcaacacaaacaatgggtccacgtcctgcagcagcagctact
gcagctactcctgctgtacgcacagtaccacaatacaaatatgctgcaggtgttcgtaat
cctcagcagcatcttaatacacagccgcaggtcgctatgcagcagcctgctgtccatgtg
caaggtcaggaacccttgactgcttccatgttggcttctgcccctccacaagaacaaaag
cagatgttaggtgaacgtctatttcctctcattcaaagcatgcaccctactctggcgggt
aagatcactggtatgttgttggagattgacaactctgaactcctccacatgctcgagtct
cctgagtctcttcgttcgaaggttgatgaagctgtagccgtactacaagcccaccaagct
aaagaggctgctcagaaggcagttaataatcccactggggttccaagtgtttaa
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