Harpia harpyja (harpy eagle): 128143292
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Entry
128143292 CDS
T10541
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hhar Harpia harpyja (harpy eagle)
Brite
KEGG Orthology (KO) [BR:
hhar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hhar03016
]
128143292 (RTCB)
Enzymes [BR:
hhar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
128143292 (RTCB)
Transfer RNA biogenesis [BR:
hhar03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
128143292 (RTCB)
Prokaryotic type
tRNA splicing ligases
128143292 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
128143292
NCBI-ProteinID:
XP_052646330
LinkDB
All DBs
Position
6:complement(25277994..25290599)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMHVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
TEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcagtacctggacaagatcgataagaactgctgg
cggatcaagaagggcttcgtgccgaacatgcatgtggagggcgttttctacgtgaacgac
cccctggagaagctgatgttcgaggagctgcgcaacgcctgccgcggcggaggtgcaggt
ggttttttgcctgcaatgaaacagattgggaatgtggctgcattacctggcattgttcat
agatcaataggccttccagatgtccattctggctatgggtttgccattggcaacatggcc
gcctttgatatgaatgatcctgaagcagtggtttcaccaggtggtgtcggatttgacatc
aactgtggtgtccgcttactacgtacaaatttggatgaaagtgatgtgcagcctgtgaag
gagcagctcgcccaggctatgtttgaccacattcctgttggtgtcggctccaaaggtgtc
atccccatgaatgccaaggatttggaagaggcactagagatgggtgtggactggtctctc
cgggaaggctatgcctgggcagaggacaaggagcactgtgaggaatatggaagaatgctt
caggctgaccccaacaaggtttcttcaagagcaaagaagaggggcctgccgcagctgggg
accctgggagcgggaaatcattacgccgagatccaggttgtggatgacatttacaacgaa
tatgctgccaggaagatgggcatcgaccacaaagggcaggtgtgcgtgatgatccacagt
ggcagcagaggtctgggccaccaggttgccacagatgcgttggtggctatggaaaaagct
atgaagcgggacaaaatcatagtgaatgatcgccagctggcgtgtgccaggattgcctcc
acagagggacaggattacttgaagggaatggcagctgctggaaactatgcatgggtcaac
cgctcttctatgacttttctaacaagacaggcctttgccaaagtcttcaacacaacccca
gatgacctcgatatgcatgttatctatgatgtgtctcacaacattgccaaagtggagcaa
catgtagtggatggaaaggagcggactctgctggtgcacagaaaaggatcaaccagggcc
ttccctcctcaccatcctcttattgctgtcgattatcaactgactggacagcctgttttg
attggcgggactatgggcacctgtagctatgttcttactggcacagagcaaggcatgacc
gagacctttggaactacttgccatggagctggtcgtgcactgtctcgagccaaatctcga
cgtaacttggacttccaggatgtattggacaagctggctgacatgggcattgccatccgt
gttgcttctcccaaactggtcatggaagaagcaccagagtcttataagaacgtgacagat
gtagttaacacctgccatgcagctggcatcagcaagaaagccattaaactgagacctatt
gctgttataaaaggctag
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