Halobacterium hubeiense: Hhub_2818
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Entry
Hhub_2818 CDS
T04202
Symbol
cdc48b
Name
(GenBank) AAA-type ATPase (CDC48 subfamily)
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hhb
Halobacterium hubeiense
Pathway
hhb04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hhb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Hhub_2818 (cdc48b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhb03019
]
Hhub_2818 (cdc48b)
03009 Ribosome biogenesis [BR:
hhb03009
]
Hhub_2818 (cdc48b)
04131 Membrane trafficking [BR:
hhb04131
]
Hhub_2818 (cdc48b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hhb04147
]
Hhub_2818 (cdc48b)
Messenger RNA biogenesis [BR:
hhb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Hhub_2818 (cdc48b)
Ribosome biogenesis [BR:
hhb03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Hhub_2818 (cdc48b)
Membrane trafficking [BR:
hhb04131
]
SNARE
SNARE associated proteins
Others
Hhub_2818 (cdc48b)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Hhub_2818 (cdc48b)
Exosome [BR:
hhb04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Hhub_2818 (cdc48b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_2
AAA_5
TIP49
AAA_22
AAA_14
AAA_33
nSTAND3
NPHP3_N
RNA_helicase
AAA_28
AAA_7
IstB_IS21
DUF815
Mg_chelatase
AAA_3
Sigma54_activat
ABC_tran
AAA_17
AAA_18
TsaE
ATPase
Parvo_NS1
NB-ARC
SLFN-g3_helicase
AAA_24
AAA_11
PhoH
AAA_30
AAA_19
NACHT
Zeta_toxin
AAA_lid_PRS2_C
NTPase_1
bpMoxR
Bac_DnaA
ATPase_2
ATP-synt_ab
Histidinol_dh
Molydop_binding
Zot
Motif
Other DBs
NCBI-ProteinID:
CQH58751
UniProt:
A0A0U5H5B8
LinkDB
All DBs
Position
I:1653286..1655559
Genome browser
AA seq
757 aa
AA seq
DB search
MKLTVKPLKQKDAGRGLAAIDRAAMDELDLENGDYVVLSSDQGRAVARVWPGYPEDEGEG
IVRIDGRLRQEAEVGIDDNVAVEPADIKPATAVTVALPQNLRVRGDITPMVRDRLSGRPV
TTGQTIPISFGFGGMSTVSGQQIPVKIADTDPDGTVVVSNDTEIQVSEQPAEEIAAGAPA
GEAGDSTPNVAYEDIGGLDRELEQVREMIELPMRHPELFQQLGIEPPKGVLLHGPPGTGK
TLIAKAVANEIDAHFQTISGPEIMSKYYGESEEKLREVFDEAEENAPAIVFIDEIDSIAP
KRGETQGDVERRVVAQLLSLMDGLEERGDVTVIAATNRVDAIDPALRRGGRFDREIEIGV
PDKDGRKEILQVHTRGMPLAEEIDIDAFAESTHGFVGADIESLAKEAAMNALRRVRPDID
LEADEIDAELLESIQVTEDDFKAALKGIEPSALREVFVEVPDVTWDQVGGLEDTKERLRE
TIQWPLDYPEVFESMDLQSAKGVLLYGPPGTGKTLLAKAVANEANSNFISVKGPELLNKY
VGESEKGVREVFEKARANAPTVVFFDEIDSIAGERGSNMGDSGVGERVVSQLLTELDGIE
ELEDVVVVATTNRPDLIDSALLRPGRLDRHVHVPVPDEDARRAILDVHTRNKPLADDVDL
DYLASETANFVGADIEALVREATMNATREFINSVDPEEAIESVGNVRITAEHFDEALTDI
TPSVDEDVREQYEELEEKFEKAATPEEEERTTPGAFQ
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcacggtcaagccgctcaagcagaaggacgcgggccgtggactggccgccatc
gaccgcgcggcgatggacgaactcgacctcgagaacggcgactacgtcgtcctcagcagc
gatcagggtcgcgccgtcgcccgcgtctggccgggctaccccgaggacgagggcgagggc
atcgtccgcatcgacggccgcctccgtcaggaggccgaagtcggcatcgacgacaacgtc
gccgtcgaacccgccgacatcaagcccgcgaccgccgtcacggtcgcgctcccgcagaac
ctccgcgttcgcggcgacatcacgccgatggtgcgcgaccgcctgagcggccgccccgtc
accaccgggcagaccatccccatctccttcggtttcggcgggatgagcacggtctccggc
cagcagattcccgtcaaaatcgcggacacggaccccgacggcacggtcgtcgtgagcaac
gacaccgagattcaggtctccgagcagcccgccgaggaaatcgccgcgggcgcgcccgcc
ggcgaagccggcgacagcacgccgaacgtcgcctacgaggacatcggcggcctcgaccgc
gaactcgaacaggtccgggagatgatcgaactcccgatgcgccaccccgagctgttccag
cagctcggcatcgaaccgccgaagggcgtgctcctccacggcccgcccggaacggggaag
acgctcatcgcgaaggccgtcgccaacgagatcgacgcgcacttccagacgatttcgggc
cccgagatcatgtcgaagtactacggggagagcgaggagaagctccgcgaggtcttcgac
gaggccgaggagaacgctcccgccatcgtcttcatcgacgagatcgactccatcgcgccc
aagcgcggcgagacgcagggtgacgtcgagcgccgcgtcgtcgcccagctcctctcgctg
atggacgggctcgaagagcgcggcgacgtcacggtcatcgcggcgaccaaccgcgtggac
gccatcgaccccgcgctccgccgcggcggccgcttcgaccgcgaaatcgaaatcggcgtc
cccgacaaggacggccgcaaggagattctccaggtccacacgcgcggcatgcccctcgcc
gaggaaatcgacatcgacgcgttcgccgaatccacgcacggcttcgtcggcgcggacatc
gagagcctcgcgaaggaagccgcgatgaacgcgctccggcgcgtccgcccggacatcgac
ctcgaagccgacgagatcgacgccgaactcctcgaatccatccaggtcaccgaggacgac
ttcaaggccgcgctgaagggcatcgagccctcggcgctccgcgaagtgttcgtcgaagtc
ccggacgtcacctgggaccaggtcggcggcctcgaagacaccaaagagcgcctccgcgag
accatccagtggccgctggactaccccgaggtcttcgagtccatggacctccagtccgcg
aagggcgtgttgctgtacggtccgccgggcacggggaagacgctgctcgcgaaggccgtc
gccaacgaggccaactcgaacttcatctccgtgaagggccccgaactcctcaacaagtac
gtcggggagtccgagaagggcgtccgcgaggtcttcgagaaggcgcgcgcgaacgccccc
acggtggtgttcttcgacgagatcgactccatcgccggcgaacgcggctccaacatgggc
gactccggcgtcggcgaacgcgtcgtcagccagctcctcacggaactggacggcatcgag
gaactggaggacgtggtggtcgtcgcgacgacgaaccgccccgacctcatcgacagcgcc
ttgctccgtccgggccgcctggaccgccacgtccacgtccccgtcccggacgaggacgca
cgccgcgccatcctcgacgtccacacgcgcaacaagccgctggccgacgacgtcgacctc
gactacctcgccagcgagaccgcgaacttcgtcggcgcggacatcgaagcgctcgtccgc
gaagccacgatgaacgccacccgcgagttcatcaactccgtggaccccgaggaagccatc
gaatccgtcggcaacgtccgcatcaccgccgaacacttcgacgaagcgctcacggacatc
acgcccagcgtcgacgaagacgtccgcgagcagtacgaggaactcgaagagaaattcgag
aaggcagccacccccgaggaagaagaacgcaccacccccggggcgttccaatag
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