Halobacterium hubeiense: Hhub_2827
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Entry
Hhub_2827 CDS
T04202
Symbol
rtcB
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hhb
Halobacterium hubeiense
Brite
KEGG Orthology (KO) [BR:
hhb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hhb03016
]
Hhub_2827 (rtcB)
Enzymes [BR:
hhb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Hhub_2827 (rtcB)
Transfer RNA biogenesis [BR:
hhb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Hhub_2827 (rtcB)
Prokaryotic type
tRNA splicing ligases
Hhub_2827 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
CQH58785
UniProt:
A0A0U5H1L8
LinkDB
All DBs
Position
I:1662182..1663681
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AA seq
499 aa
AA seq
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MNTFDADGVTLREVEDDVWELERDDEMRVPARVFANETLLEDIQNDKTLEQLRNVACMPG
VVAPALCMPDGHQGYGFPVGGVAAFDAEDGYISPGAVGFDINCGVRMVKTNLTYEDVRGR
EEELVDALFDAVPCGLGGGGVHDVSHTDLEAALERGVDWCVEEGYAVREDRLHCEDEGRR
PDADPSAVSKKAKDRGANQMGSLGSGNHFLEIQRVTDVYDDETADAFGLDEDQVVVLIHC
GSRGLGHQVCSDYLRRIEQEYPDLTEDLPDKDLAAAPAGSELADDYYGAMCAAINFAWVN
RQLITHAVRETFADVFDTSWQALEMDLLYDVAHNIAKKEAHDVYVTDDGYSLDGDGGRVQ
RDLYVHRKGATRAFPAGHPDVPTAYREVGQPIIIPGSMGAGSYILKGGSQSLARSFGSTA
HGAGRLMSRTQAKREYGGGEVQTDLREQNEIYVKAASGETIAEEAPGVYKDVDEVVGVSD
ALDIGDLVVRTFPIANIKG
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgaacacgttcgacgccgacggcgtcacgctccgagaggtcgaggacgacgtctgggag
ctcgaacgcgacgacgagatgcgggtgcccgcccgcgtgttcgccaacgagacgctcctt
gaggacatccagaacgacaagacgctcgaacagctccggaacgtcgcgtgcatgccgggc
gtggtcgcgcccgcgctctgcatgcccgacggccaccaggggtacggcttcccggtcggc
ggcgtcgccgccttcgacgccgaggacggctacatctcgcccggagcagtcgggttcgac
atcaactgcggcgtccggatggtgaagacgaacctcacgtacgaggacgtgcgcggtcgc
gaggaggaactcgttgacgcgctgttcgacgccgtgccctgcggactcgggggcggcggc
gtccacgacgtcagccacacggacctcgaagccgcgctcgaacgcggcgtggactggtgc
gtcgaggaggggtacgcggtgcgcgaggaccgcctgcactgcgaggacgagggccggcgc
ccggacgccgacccgtccgcggtctcgaagaaggccaaggaccgcggcgccaaccagatg
gggtcgctgggctccgggaaccacttcctcgaaatccagcgcgtcaccgacgtctacgac
gacgagaccgccgacgcgttcggcctcgacgaggaccaggtcgtcgtcctgattcactgc
ggctcgcgcgggctcggccaccaggtctgctcggactacctccggcgcatcgagcaggag
tacccggacctcaccgaggacctcccggacaaggacctcgcggcggcgcccgcgggctcg
gaactggccgacgactactacggcgcgatgtgcgcggccatcaacttcgcgtgggtgaac
cgccagctcatcacgcacgccgtccgcgagacgttcgcggacgtcttcgatacgtcctgg
caggccctggagatggacctgctgtacgacgtcgcgcacaacatcgcgaagaaagaggct
cacgacgtctacgtcaccgacgacggctacagcctcgacggcgacggcggccgcgtccag
cgcgacctctacgtccaccggaagggcgcgacgcgcgcgttccccgccggccaccccgac
gtgccgacagcgtaccgcgaggtcggccagcccatcatcatccccgggagcatgggcgcc
ggcagctacatcctgaagggcgggtcgcagtcgctggcgcgctcgttcggctcgaccgcc
cacggcgccggccgcctgatgagccgcacgcaggcgaaacgcgagtacggcggcggcgag
gtgcagaccgacctccgcgaacagaacgagatctacgtgaaagccgcctccggcgagacc
atcgccgaggaagcccccggcgtctacaaggacgtcgacgaggtagtcggcgtctccgac
gccctcgacatcggcgacctcgtcgtccgcacgttccccatcgcgaacatcaaggggtag
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