Halobacterium hubeiense: Hhub_2997
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Entry
Hhub_2997 CDS
T04202
Symbol
cdc48a
Name
(GenBank) AAA-type ATPase (CDC48 subfamily)
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hhb
Halobacterium hubeiense
Pathway
hhb04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hhb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Hhub_2997 (cdc48a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhb03019
]
Hhub_2997 (cdc48a)
03009 Ribosome biogenesis [BR:
hhb03009
]
Hhub_2997 (cdc48a)
04131 Membrane trafficking [BR:
hhb04131
]
Hhub_2997 (cdc48a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hhb04147
]
Hhub_2997 (cdc48a)
Messenger RNA biogenesis [BR:
hhb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Hhub_2997 (cdc48a)
Ribosome biogenesis [BR:
hhb03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Hhub_2997 (cdc48a)
Membrane trafficking [BR:
hhb04131
]
SNARE
SNARE associated proteins
Others
Hhub_2997 (cdc48a)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Hhub_2997 (cdc48a)
Exosome [BR:
hhb04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Hhub_2997 (cdc48a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
AAA_16
RuvB_N
AAA_5
TIP49
AAA_22
AAA_2
AAA_33
nSTAND3
AAA_14
NPHP3_N
RNA_helicase
IstB_IS21
AAA_28
Mg_chelatase
AAA_7
Sigma54_activat
AAA_18
ABC_tran
ATPase
DUF815
AAA_3
AAA_17
AAA_24
NB-ARC
Parvo_NS1
AAA_30
AAA_lid_PRS2_C
TsaE
AAA_11
SLFN-g3_helicase
PhoH
NACHT
IPT
Vps4_C
Zot
Motif
Other DBs
NCBI-ProteinID:
CQH59510
UniProt:
A0A0U5H370
LinkDB
All DBs
Position
I:1817646..1819871
Genome browser
AA seq
741 aa
AA seq
DB search
MNEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGAETTAAKVWRADRQDWN
TDTIRIDGFTRQNADVGIGERVKIRKADAEKADRLVLAPPEDASVQFGSDAAGMVKRQIL
KRPVVSRDIVPVMSSTNHPFMRSPGQAIPLIAVETEPEGVCLITEDTDVELREEPISGFE
RTGGGITYEDIGGLENEIQRVREMVELPMKHPQIFQKLGIEPPQGVLLHGPPGTGKTLLA
KAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKEDSPSIIFIDELDSIAPKRED
VTGEVERRVVAQLLTMMDGLEGRGQVIVIAATNRVDAVDPALRRPGRFDREIEIGVPDEV
GREEILKIHTRGMPLSDDVNLSSLADDTHGFVGADIESLTKEAAMRALRRYLPEIDLDEE
DIPPSLIDRMIVKRDDFKGALNEVEPSAMREVLVELPKLSWDDVGGLDEAKEDIKEAVEW
PLNQPEKFTRMGIDPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGES
EKAIRQTFRKARQVSPTVIFFDELDSLAPGRGQEVGNNVSERVVNQLLTELDGLEEMEEV
MVIAATNRPDIIDPALIRSGRFDRLVQVGQPDVEGREQILKIHTQDIPLAPDVSLRELAE
VTDGYVGSDLANITREAAIEALREDEDAEEVEMRHFRRGMEDVRPTVTEDLMDYYDRVEE
QFKGSQNPETSREKGGHIGFQ
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagtccaacttgaggtggcgaaagcctacccgaacgactcgggcaggggtatc
gctcgcctcgaccccgacacgctcctgcacctgaagctcagcccgggagacatcatcgaa
atcgagggtgccgagacgaccgccgcgaaggtctggcgcgccgaccggcaggactggaac
accgacaccatccgcatcgacgggttcacgcgacagaacgccgacgtcggcatcggcgag
cgcgtcaagatccggaaggccgacgccgagaaggccgaccggctcgtgctcgcaccgccg
gaggacgcaagcgtccagttcggcagcgacgccgccggtatggtcaaacgtcagattctc
aagcgcccggtcgtctcgcgggacatcgtgcccgtgatgagtagcacgaaccacccgttc
atgcgctcgcccgggcaggccatcccgctcatcgccgtcgagaccgagccggagggcgtc
tgtctcatcacggaggacacggacgtcgaactccgcgaggagcccatcagcggcttcgag
cgcaccggcgggggcatcacctacgaggacatcgggggcttagagaacgagattcagcgc
gtccgggagatggtggaactcccgatgaaacacccccagattttccagaagctcggcatc
gagccgccgcagggggtgttgctgcacggcccgccgggcaccgggaagacgctgctggcg
aaagccgtcgccaacgagacgtcggcgagcttcttctccatcgctggccccgagattatc
tccaagtactacggggagagcgaacagcaactcagagaaatcttcgaggacgccaaggag
gactcgccctccatcatcttcatcgacgaactggactccatcgcgcccaagcgcgaggac
gtcaccggcgaagtcgagcgccgcgtcgtcgcccaactgctgacgatgatggacggcctc
gaaggccgcgggcaggtcatcgtcatcgcggcgaccaaccgcgtggacgccgtcgacccc
gcgctccgacgcccgggccgcttcgaccgcgaaatcgaaatcggcgtccccgacgaggtc
ggccgcgaggagattctgaagattcacacccgcggcatgccgctgtccgacgacgtgaac
ctctcgtcgctcgccgacgacacccacggcttcgtcggcgccgacatcgagagcctcacg
aaggaggcggcgatgcgcgcgctccggcgctacctccccgaaatcgacctcgacgaggag
gacatcccgccgagcctcatcgaccgcatgatcgtcaagcgcgacgacttcaagggcgcg
ctcaacgaggtcgaaccctccgcgatgcgggaagtcctcgtcgaactccccaagctgtcg
tgggacgacgtcggcggcctcgacgaggccaaagaggacatcaaggaggccgtcgagtgg
ccgctcaatcagcccgagaagttcacccgcatgggcatcgacccgcccgccggcgtgctg
ctgtacggcccgcccgggacggggaagacgctgatggcgaaagccgtcgccaacgagacc
aacgccaacttcatcagcgtccgcggcccccagctgctctcgaagtgggtcggcgagtcc
gagaaggcaatccggcagacgttccggaaggcccgccaggtctccccgacggtcatcttc
ttcgacgagctcgacagcctcgcgccaggccgcgggcaggaagtcgggaacaacgtctcc
gagcgcgtcgttaaccaactgctgacggagttggacggcctcgaagagatggaggaagtg
atggtcatcgccgcgaccaaccgccccgacatcatcgaccccgcgctcatccgctcgggg
cgcttcgaccgcctcgttcaggtcggccagcccgacgtcgagggccgcgagcagattctg
aagattcacacccaggacatcccgctcgcgcccgacgtcagcctccgcgaactcgccgag
gtgacggacggctacgtcggcagcgacctcgcgaacatcacccgcgaagccgccatcgaa
gcgctccgcgaggacgaagacgccgaagaagtcgagatgcggcacttccgccgcggcatg
gaggacgtccgccccaccgtcacggaagacctcatggactactacgaccgcgtcgaagaa
cagttcaagggcagtcagaaccccgagaccagccgcgagaagggcggccacatcgggttc
caatag
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integrated database retrieval system
