Halobacterium hubeiense: Hhub_3535
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Entry
Hhub_3535 CDS
T04202
Symbol
polD2
Name
(GenBank) DNA-directed DNA polymerase D large subunit (intein-containing)
KO
K02322
DNA polymerase II large subunit [EC:
2.7.7.7
]
Organism
hhb
Halobacterium hubeiense
Pathway
hhb03030
DNA replication
Brite
KEGG Orthology (KO) [BR:
hhb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Hhub_3535 (polD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hhb03032
]
Hhub_3535 (polD2)
Enzymes [BR:
hhb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Hhub_3535 (polD2)
DNA replication proteins [BR:
hhb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (archaeal)
D-family DNA polymerases
Hhub_3535 (polD2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PolC_DP2_central
PolC_DP2_cat
PolC_DP2_N
Intein_splicing
LAGLIDADG_3
Hom_end
DUF7129
zf-DPOE
Motif
Other DBs
NCBI-ProteinID:
CQH61752
UniProt:
A0A0U5H3K4
LinkDB
All DBs
Position
I:2296052..2301115
Genome browser
AA seq
1687 aa
AA seq
DB search
MRPEDEDYFESLEAGLDEAFDVAERAKRRGEDPKPEVEIPVAKDMADRVENILGIDGVAE
RVRDLEGEMSREEAALELVEDFVEGRVGDYETKAGKVEGAVRTAVALLTEGVVAAPIEGI
DRVEVNANDDGTEYVAVYYAGPIRSAGGTAQALSVLVADYARALLDIDRFKPRDDEIERY
AEEVDLYDSETGLQYSPKDKETKFITEHCPVMLDGEATGDEEVDGFRDLERIATNSARGG
MCLVLAEGIALKAPKIQRYTRNLEEVEWPWLQDLIDGTIGKDDSEGDDDNSDDAADEAEV
STDADDASDEPEGPPRVDPSNKFLRDLIAGRPVFGHPSNEGGFRLRYGRSRNHGFATAGI
HPATMHLVDDFLATGTQIKTERPGKAAGIVPVDSIEGPTVKLANGDVRRIDDPEEALEVR
NGVVEILDVGEYLVNYGEFVENNHELAPASYAPEWWIQDFEAAGADVQALRDSPYVDLEA
PDADQALEWATEYDAPLHPAYTYLWHDIEVADFEALADAVANARTEAGDLVLNNEDAVRE
PLEALLVEHRQDDDEIRIPDWLPLVRSLGVTEDLSREWDDLSADAREWPNALAAVNEVAP
FEVRERAPTRIGNRMGRPEKSESRDLSPAVHTLFPIGEAGGSQRDVSEAARYAPDMKDTP
GKLDVQLGVRECPSCGDHTFEPRCGDCGEWTDPHYECPDCNVSAEPDESGRVECPRCERE
LDNVAVQTVDVGAEYRDALQAVGERENAFDQLKGVKGLSSAEKVPEPMEKGVLRAKHDVS
TFKDGTVRYDMTDLPVTSVKPSELDVTVEHFRELGYEEDIHGDPLEHDDQLVELRVQDVV
LSDGAAEHMLQTADFVDDLLTQYYGLDPFYELEERDDLVGELVFGMAPHTSAAVVGRVIG
FTSASVGYAHPYFHAAKRRNCDGDEDCVMLLMDGLINFSKSYLPDQRGGSVAEDSRLVAV
DPDGDVRFLTFDEFWDELEAPIETDGKFRKRTCYSEGWQTYAFDDNHEASLEPIEKAIRY
QADDDDQLVRVETQFGRSLEITEHHSLFRYDDGIEEVAGADLEAGDLVVAPRDLDVDTRE
TTLDVTDCVDDPYVVIDDDVEELLRTAWESTDRGSETHGAFNAGLAYRLNKSKIGFERFQ
QILAHSELDVPTDIEVGLEGSSLGITRTIEVDEDFAWLLGLFVAEGTTSSVNPCIHNADE
DLIDRAADIATDKLGTEPGRRWSNRAYELRFPAVFREVLYSLGFENADSYDSSEKVVPEC
ILHAPRSVVLDFLRGFIAGDGSDSSNDNVTTVSFHTTSDDVKDGIMFLLHRLGLVANVST
KTNRDGNRQDIHTVTVSGGANDNPLHRLLDGDDPYLPKSLVVSIPSTLMELREMDIAGVK
QTIPKYLKRRDNISLEKLTEIVDTLDEQELPSQAEAVLEELRPLVDGDLSYLRVKDIESV
DYDGYLYDLQVGGDPVFTANWLYAHNSMDAPLVMSSRIDPSEIDDEAHNMDVVSQYPREF
YEATRELADPGEVEDLVEIAEESLGTDTEYAGFEHTHDTSDIHLGPSLSAYKTLGSMMDK
MDAQLELARKLRAVDETDVAERVIEYHFLPDLIGNLRAFSRQETRCLDCGEKYRRMPLTG
DCRECGGRVNLTVHEGSVNKYMDTAITVAEEYDCREYTKQRLEVLQNSLESIFENDKNKQ
SGIADFM
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atgcggcccgaggacgaggactacttcgagtcgctggaagccggcctcgacgaggccttc
gacgtcgccgagcgcgcgaagcgccgcggcgaggaccccaagcccgaggtcgagattccg
gtcgccaaggacatggccgaccgcgtcgagaacatcctcggcatcgacggcgtcgccgag
cgcgtgcgcgacctcgaaggggagatgagccgcgaggaggccgcgctcgaactcgtcgag
gacttcgttgagggccgcgtcggcgactacgagacgaaagccgggaaagtcgagggcgcg
gtccgcaccgcggtcgcgctcctcacggagggcgtggtcgcggcgcccatcgaaggcatc
gaccgcgtcgaggtcaacgccaacgacgacggcaccgagtacgtcgccgtctactacgcc
ggccccatccggtccgcgggcgggaccgcgcaggcgctgtccgttctggtcgcggactac
gcccgcgcgctgctggacatcgaccggttcaagccccgcgacgacgaaatcgagcgctac
gccgaggaggtggacctctacgactccgagaccggcctccagtactcgccgaaggacaag
gagacgaagttcatcaccgagcactgtcccgtcatgctggacggggaggcaaccggcgac
gaggaagtcgacggtttccgcgacctcgagcgcatcgcgacgaactccgcgcgcggcggg
atgtgcctcgtgctcgcagagggcatcgcgctgaaggcgccgaagattcagcgctacacg
cggaatctggaggaggtcgagtggccgtggctgcaggacctcatcgacggcaccatcggc
aaagacgacagcgagggcgacgacgacaacagcgacgacgctgcagacgaggccgaggtg
tccaccgacgccgacgacgccagcgacgaaccggagggcccaccgcgcgtggacccgtcg
aacaagttcctccgggacctcatcgcgggccgtcccgtcttcggccacccctcgaacgag
ggcggcttccggcttcgctacggccgctcgcgcaaccacgggttcgcgaccgccggcatc
cacccggcgacgatgcacctcgtggacgacttcctcgcgaccggcacgcagatcaagacc
gagcgccccgggaaggccgccggcatcgtccccgtggactccatcgagggcccgacggtc
aaactcgcgaacggcgacgtccgccgcatcgacgaccccgaggaagccctggaagtcagg
aacggcgtcgtcgagattctggacgtcggcgagtacctcgtgaactacggggagttcgtg
gagaacaaccacgagctcgcgcccgcctcctacgccccggagtggtggattcaggacttc
gaggccgcaggtgcggacgtgcaggcgctccgggactcgccgtacgtcgacctcgaagcg
cccgacgccgaccaggcgctcgaatgggcgaccgagtacgacgcccccctccacccggcg
tacacgtacctctggcacgacatcgaggtcgcggacttcgaagccttggcggacgccgtc
gcaaacgcccgcacggaggccggcgacctcgtcctcaacaacgaggacgcggtccgcgag
ccgctggaagcgctgctcgtcgaacacaggcaggacgacgacgagattcgcatcccggac
tggctgccgctcgtgcgctcgctcggggttaccgaggatctgtcccgcgagtgggacgac
ctctccgcggacgcccgcgagtggccgaacgcgctcgccgccgtcaacgaggtcgcgccc
ttcgaggtccgcgagcgtgcgcccacgcgcatcgggaaccggatgggtcgcccggagaag
tccgagtcccgcgacctctcgcccgcggtccacacgctgttccccatcggggaggccggc
ggcagccagcgcgacgtcagcgaggccgcccgctacgcgcccgacatgaaagacacgccc
ggcaagctcgacgtccaactgggcgtccgcgagtgcccgtcctgtggcgaccacacgttc
gagccgcgctgcggggactgcggcgagtggaccgacccgcactacgagtgcccggactgc
aacgtgagcgccgaacccgacgagtccggccgcgtcgagtgcccgcgctgcgagcgcgaa
ctcgacaacgtcgccgtccagaccgtcgacgtcggcgccgagtaccgcgacgccctgcaa
gccgtcggcgagcgcgagaacgccttcgaccagctcaagggcgtcaaggggctgtcctcc
gcggagaaagtccccgagccgatggagaaaggcgtgctccgcgcgaaacacgacgtctcc
acgttcaaggacggcaccgtccgctacgacatgaccgaccttccggtcacgtcggtcaag
cccagcgaactcgacgtcaccgtcgagcacttccgcgaactcggctacgaggaagacatc
cacggcgaccccctcgaacacgacgaccagctcgtcgaactccgcgtgcaggacgtcgtg
ctttctgatggtgctgccgagcacatgctccagaccgcggacttcgtcgacgacctcctc
acccagtactacggcctcgacccgttctacgagctggaggagcgcgacgacctcgtcggc
gagctcgtcttcgggatggcgccccacacctccgccgccgtcgtcggcagagttatcgga
tttacgtcagcttcggtcggatacgcgcacccgtactttcacgccgcgaaaagacgcaat
tgtgacggggacgaggactgcgtgatgctcctaatggacggtcttatcaatttctctaaa
tcgtacttgccggaccagcgtggtggcagcgttgccgaggattctcgactcgtcgctgtc
gaccccgacggcgatgtgcgattcctgacgttcgacgagttctgggatgagcttgaagca
ccgattgaaacggacgggaagttccgcaaacggacctgttacagcgaaggctggcagacg
tacgcgttcgacgacaaccacgaggcgtcactggaaccaatcgagaaagcgattcggtat
caagccgatgacgacgaccaactcgtccgcgtggagacgcagttcggtcggtcgctggag
ataacggaacaccacagcctcttccggtacgatgatggtatcgaggaagttgctggtgcg
gacctcgaagccggtgatttggttgtcgccccacgcgacctcgatgtcgacacccgggaa
accaccctggatgttactgactgtgtcgatgacccgtacgttgtcatcgacgatgacgtc
gaggaactcctacggacggcctgggagtcaaccgaccgagggagcgagacgcatggagcg
ttcaacgcgggactcgcatacaggctcaataagtcgaaaatcggatttgagcggttccag
cagattctcgcccacagcgaacttgacgtaccgactgacatcgaggtcggacttgaaggc
tcctcactcggcattacgcgaacaatcgaggttgacgaggacttcgcctggctcctgggc
ttgttcgtcgctgagggaactacctcaagcgtcaacccctgcatccacaacgccgacgaa
gatctcatcgaccgtgcggccgacatcgcaacggacaaactcgggaccgaaccaggacga
cgctggtcgaatcgtgcctacgaactacggttccccgccgtgttcagggaggtactctac
tcgctcggcttcgagaacgctgattcgtatgattcgagcgagaaggttgttccagagtgt
atcctccacgcaccgcggtcggtagtgctcgacttcctgcgaggctttattgctggtgac
ggaagcgacagttccaacgacaacgtgacgacagttagcttccatacgactagcgacgac
gtgaaagatggaatcatgttcctcttacaccgtctcggactcgtcgcgaacgtttcaaca
aaaacgaaccgtgacggcaacagacaggacatccacaccgtaacagtctccggcggcgcc
aacgataatccgcttcaccgacttctcgacggagacgacccgtatctccccaagagtctc
gtcgtttcgattccgtctacgctgatggaactccgcgagatggatattgcgggcgtgaaa
cagacaattccgaagtacttgaagcgtcgcgacaacatctcgttggagaaactcaccgag
atcgtcgacacgctcgacgaacaggaattgccgtcgcaggccgaggccgtgcttgaggaa
ctacgcccgctcgtggacggagacctctcgtatctgcgcgtcaaagacatcgagtccgtc
gactacgacgggtatctctacgacctccaggtcgggggtgaccccgtcttcaccgcgaac
tggctgtacgctcacaattccatggacgcgccgctggtgatgtcctcgcgcatcgacccc
agcgaaatcgacgacgaggcgcacaacatggacgtcgtcagccagtacccgcgggagttc
tacgaggcgacccgggagctggccgaccccggcgaggtcgaggacctcgtggaaatcgcc
gaggagagcctcggcaccgacaccgagtacgcgggcttcgagcacacccacgacacgtcg
gacatccacctcgggccgagcctgtcggcgtacaagaccctcgggtcgatgatggacaaa
atggacgcgcaactggagctcgcgcggaagctccgcgcggtcgacgagacggacgtcgcc
gagcgcgtcatcgagtaccacttcctcccggacctcatcgggaacctccgggcgttcagc
cgccaggagacgcgctgcctggattgcggagagaagtaccggcggatgcccctgacgggg
gactgccgggagtgcggcgggcgcgtgaacctcaccgtccacgagggctccgtgaacaag
tacatggacaccgcgatcacggtcgccgaggagtacgactgccgcgagtacacgaaacag
cgcttggaagtcctccagaacagcctcgaatccatcttcgagaatgacaaaaacaagcag
tcagggattgcggacttcatgtaa
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integrated database retrieval system
