KEGG   Halobacterium hubeiense: Hhub_3615
Entry
Hhub_3615         CDS       T04202                                 
Symbol
ligT
Name
(GenBank) 2'-5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
hhb  Halobacterium hubeiense
Brite
KEGG Orthology (KO) [BR:hhb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:hhb03016]
    Hhub_3615 (ligT)
Enzymes [BR:hhb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     Hhub_3615 (ligT)
Transfer RNA biogenesis [BR:hhb03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    Hhub_3615 (ligT)
SSDB
Motif
Pfam: 2_5_RNA_ligase2 LigT_PEase AKAP7_NLS HVSL Haem_oxygenas_2
Other DBs
NCBI-ProteinID: CQH62006
UniProt: A0A0U5HA35
LinkDB
Position
I:2373376..2373897
AA seq 173 aa
MRLFVSVDLPDRLPAEGLDFVDPGQTHVTLKFLGDVADDREDELIDALETAVADSGVEPF
DAELGGLGVFPSLDYISVVWLGVGDGSAELAQLHEAIETAFVEEHGFDPEDHDFTPHVTL
ARMNHAGGKELVQDLVRDRHPEVGTMRVAEVRLTESTLTCEGPEYETVHAVDL
NT seq 522 nt   +upstreamnt  +downstreamnt
atgcggctgttcgtcagtgtcgacctccccgaccggctccccgccgagggactggacttc
gtggaccccgggcagacccacgtcacgctgaagttcctcggcgacgtcgccgacgaccgc
gaagacgagctaatcgacgccctcgaaaccgccgtcgccgacagcggcgtcgagccgttc
gacgcggaactgggcggcctcggtgtgttcccgagcctcgactacatctccgtggtgtgg
ctcggcgtcggcgacggcagcgcggaactcgcccagttgcacgaggccatcgagacggcg
ttcgtcgaggagcacggcttcgaccccgaggaccacgacttcacgccccacgtcacgctc
gcgcggatgaaccacgccggcggcaaggaactcgtgcaagacctcgtgcgcgaccgccac
cccgaggtcgggacgatgcgcgtcgccgaggtccggctcacggagagcacgctcacctgc
gagggccccgagtacgagactgtccacgccgtggacctctag

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