Halobacterium hubeiense: Hhub_5160
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Entry
Hhub_5160 CDS
T04202
Name
(GenBank) UvrD/REP family helicase
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
hhb
Halobacterium hubeiense
Brite
KEGG Orthology (KO) [BR:
hhb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhb03400
]
Hhub_5160
Enzymes [BR:
hhb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Hhub_5160
DNA repair and recombination proteins [BR:
hhb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Hhub_5160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
AAA_16
Motif
Other DBs
NCBI-ProteinID:
CQH64715
UniProt:
A0A0U5H7W7
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Position
pSTJ002:133195..136833
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AA seq
1212 aa
AA seq
DB search
MTEEPEEIQLTEEQEDALVQGRNVAITAGAGTGKTTTLTERYVTILAENPSLTPENIVTI
TFTRKAAAELTERVREEVYDRLEAVDSPEAYHRWRNVLDDLEDGYVHTIHAFCTRLLRER
AVEAPVPLGFDVLDEDGAATLQREVVTEFLERNLDDDDVALLAQLWGRDQLVDVLTGLLD
ERPQSEAVLEEWRDAEVNDYVDICWEVVCDLDVADARQTLYADGLLEQLRTVAGRVDREG
AIADEDGLRAYRTFTEVATTLSADPEESDPRDCQRAILELYEACEKKNGGLYSSSGYVVG
DRDDWGEYGDVYDDLKDTIDTVIDAVEPHADAVETTPGELEANSAHYALALMRVFNDVLA
AYADEKERRDTLDFPDVIETTLEFLRANDVVTERLREQFAAVMVDEFQDTDPRQWELVKL
LTGVDEQTASNVFLVGDEKQSIYGFRGADVTTFGDARRELQTVNEARGVDDVPDSDGESP
TALELSGNFRTLDEPLSFLNELFEYLFQPEGDTHEPYEAPPQGLSTQRDRVEDIEGLTGS
VEYLAVPDDADTAAELFGDDHPVAEGALDHTIEAEAQALTARLTHLFDDPPQVQDPDTGA
HRDATPDDTAILLRRRTHLDRYQRALEKYDIPYTVVGGVGFYDTPEVQALTNLLRVLGDP
QDDVSLYGVLRSPLFGFADDRLAPAVAEANSVWDALAEADDPQLADAFDLLTTWRTLSGC
ATPSEDGVLPWNRLLSRVIDDTGYLASVSADERGRQAVANVEKFRDQVRTWSENGVHTAA
GLLHRIDRQAEIDPREGEADIPGDVEGVRIMTIHAAKGLEFPIVTVPDLGSDLNFGRSVD
DHGYVRLVKGTTDAPPIPAVGGPHPNDAFSIEKTAVHEYADRRSLPQERAESKRLLYVAC
TRTRDHLLLCGTHDIDIDESGHIELGEPDDFDDASRWRDWLQPILFDDQELVAEAVHEGA
TDARIGDASYTIQTPPRPVEWQSEAPSEEVDPAITVPSPPEQQAAVRVAATTLVSAVADA
YEDGHSYTTGDETIGLSPTTFGTVVHRLNELRPPRDEWPSFIRQLSRMGGEEPTDGDLQA
AVSHAQDAIRFVDETEADLPLEATYDEYSVVARLDDSRIVGDIDRLLVTPDAYHIIDYKT
NDLSSTTTDTLADHYRPQMLAYALALFQHDPARQVRASLRFTDVGVEERFEWQRSELTDI
ESELRSMLELVS
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgactgaggaacccgaggagattcagctcacagaggaacaggaggacgcgctcgtccag
ggccggaacgtcgcgatcactgccggcgccgggacggggaagacgacaacgctcaccgag
cggtacgtgacgatactggccgaaaacccatcgctcacgccggagaacatcgttacgatc
accttcacacgaaaggccgctgccgaactgaccgagcgcgttcgggaggaggtgtacgac
cggctcgaggctgtcgactcaccagaagcctatcaccgctggcgaaacgtcctcgacgac
ctggaggatggctacgtccacaccattcacgcgttctgtacgcggctcttgcgagaacgg
gccgtcgaggctccggtcccgctcggcttcgacgtactcgacgaagacggcgctgcgaca
ctccaacgcgaagtcgtgacggagtttctcgaacgcaacctggacgatgacgacgtcgcg
ctactcgctcagctttggggtcgcgaccagctggtcgatgtactcactggactactcgat
gagcgcccacagagcgaggcggtcctcgaggagtggcgtgatgcggaggtcaacgactac
gtcgatatctgctgggaggtcgtttgtgatctcgacgtcgccgacgcccgacagacgctg
tatgcggacggactccttgagcagctacgcacggttgcgggccgtgtcgaccgcgagggc
gctatcgccgacgaagacggtcttcgagcctaccggaccttcaccgaagtcgcgaccaca
ctctcggccgacccggaggaaagcgatcctcgcgactgtcaacgggcaatcctcgagctc
tacgaggcctgtgagaagaagaacggcggcctgtacagcagttcggggtacgtcgtcggt
gaccgggacgattggggtgagtacggtgacgtctacgacgacctgaaagacaccatcgac
acggtcatcgatgccgtcgaaccgcacgcggatgcggtcgagacgacgcccggtgagctc
gaagcgaacagcgctcactacgcgctcgccctaatgcgcgtcttcaacgacgtcctcgcc
gcctacgccgacgagaaggagcgccgcgatacgctcgacttccccgacgtgatcgagaca
accctcgagttcttgcgagcgaacgatgtcgtcacggagcggcttcgagagcagtttgcg
gccgtgatggtcgacgagttccaggacacggacccgcgccagtgggagttagtcaagctc
ctcacgggcgtcgacgagcagacggcgtcgaacgtcttcctggtcggcgacgagaaacag
agcatctacggattccgcggggccgacgtgacgacgttcggggatgcgcgcagagaactc
cagaccgtcaacgaggctcgtggggttgacgacgttcccgacagcgacggcgagagtccg
accgccctcgaactctccgggaatttccggacgctggacgagccgttgtcgttcctgaac
gagctcttcgagtacctgttccaaccagaaggtgacacccacgaaccctacgaagcgcca
cctcagggactgagtacgcagcgcgaccgtgtcgaggacatcgagggactgaccgggagt
gtcgagtatctcgctgtccccgacgacgccgatacggcagcggagctcttcggcgacgac
catccggtcgccgaaggcgcgctcgaccacaccatcgaggccgaagcgcaagcgctcaca
gctcgactgacccacctgttcgacgatccgccgcaagtccaagaccccgacacaggtgct
catcgtgacgctacgccggacgacacggcaatcctcctccgccgacgaactcatctggat
cggtatcagcgcgctctcgagaagtacgacatcccctacactgtcgtcggtggcgtcgga
ttctacgatacgcctgaggtccaggcgctcacgaacctgcttcgagttctcggtgatcca
caggacgatgtctccctctacggggtgcttcggtcgccgctgttcggattcgcggatgat
cgtctcgcaccggcggtcgcagaggccaattcagtgtgggatgcgctcgccgaggcggac
gatccacagctcgcggacgcgttcgacctccttacgacgtggcggaccctcagcggctgt
gcgacgccgtctgaggatggcgtcctcccgtggaaccgcctgctgtcccgagtgatcgat
gacacggggtatctggctagtgtgagtgctgatgaacgcggtcgacaggccgtcgcgaac
gtcgagaagttccgcgaccaggtccgtacctggagcgagaacggtgttcatacagctgcc
gggttgctccaccggatcgaccgccaagccgagatcgatccccgagagggggaggctgac
attcccggtgatgttgagggagttcggataatgacgattcacgccgcgaagggactcgag
ttcccaatcgtcactgttcccgatctcggaagtgacctcaatttcgggcggtccgtcgat
gaccacggctatgtccgcctcgtcaaggggacgactgatgctccaccgattcctgccgtg
ggtggtccccaccccaacgatgcgttctcaatcgaaaagacggcagtccacgaatatgct
gatcgtcgctcgctcccgcaagagcgtgcggaatccaaacgactgctctacgtggcctgt
acccgaactcgggaccacctgctgttgtgtgggacacacgatatcgatatcgatgagtct
ggacacatcgaactcggtgagccagatgatttcgacgacgccagccgatggcgggattgg
ctccagccaattctgtttgacgaccaagagctagtcgctgaggcggttcacgagggagct
acggacgctcgaatcggtgacgcttcatacactattcagacgccacctcggccggttgaa
tggcagtctgaggctccgagtgaagaggtagaccctgcgattactgtcccctccccgcca
gaacaacaggccgctgttcgcgttgccgcgacgactctcgtcagtgctgttgcggatgcc
tacgaggacggacatagctacacgacgggggatgagacaatcggattgagtccgaccacc
ttcggaactgttgtccatcggctcaatgagctccgtcctccacgggatgagtggccctcg
ttcattcgtcagttgagtcgtatgggaggtgaggaaccgacggatggcgacctccaagca
gccgtgagccatgcccaggatgcgatccggttcgtcgatgaaactgaggcggacctccca
ctcgaagcgacctatgacgagtactcagttgtcgctcgtctcgatgattcccgcatagtg
ggtgatattgaccgtcttctggtcactcctgatgcgtatcatatcatcgactacaagacg
aacgatctttcgtcgacgacgactgataccctcgctgaccactatcggccgcaaatgctt
gcctacgctctcgcgctcttccagcacgatcccgcccggcaggttcgtgcttcactccgg
tttaccgatgttggggtggaagaacggtttgagtggcaacggagtgaactgactgatatc
gaatctgaacttcgctctatgttggagctcgtctcctga
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