Ectothiorhodospira haloalkaliphila: M911_02885
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Entry
M911_02885 CDS
T03059
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
hhc
Ectothiorhodospira haloalkaliphila
Pathway
hhc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hhc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
M911_02885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhc03400
]
M911_02885
Enzymes [BR:
hhc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
M911_02885
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
M911_02885
DNA repair and recombination proteins [BR:
hhc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
M911_02885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_6
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AHK78291
UniProt:
W8KRV3
LinkDB
All DBs
Position
complement(595271..596086)
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AA seq
271 aa
AA seq
DB search
MPELPEVETTRRGIEPHLTGRRITQVHIRQPRLRWPIPTDLPHRLQGRTITRVERRGKYL
LIQCPPGTVLIHLGMSGSLRLVPPDAPPRPHDHVDLTLDSGLTLRLHDPRRFGALLWFDP
ETGNHPLLAHLGPEPLGDSFDADYLFRISRGRRISIKALIMNSQVVVGVGNIYASESLFL
AGIRPRRAAGRLTRAEATRLVAAIRQVLEASIAQGGTTLRDFVHEDGAHGYFSQSLRVYG
RPQAPCTTCQTPIKHITQGGRSSYYCPTCQK
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactgcccgaggtggaaaccacccggcgcggcatcgaaccccacctcaccgga
cgccgcatcacccaggtccacatccggcagccgcgactgcgctggcccatacccaccgac
ctgccccatcgacttcaggggcgcacgatcacccgcgtcgagcgcaggggcaaatacctg
ctcatccagtgccccccggggaccgtcctcatccacctgggcatgtccggcagcctgcgc
ctggtgccccccgacgccccaccccgcccccacgatcacgtggacctcaccctggactcc
ggcctcaccctgcgcctgcacgacccacgccgcttcggggccctgctctggttcgacccc
gaaaccggcaaccaccccctgctcgcccacctgggccccgaacccctgggcgacagcttc
gatgccgactacctgttccgcatcagccgcggccgccgcatcagcatcaaggccctgatc
atgaacagccaggtcgtggtaggggtgggcaacatctacgcctccgaatccctgttcctg
gccggcatccgcccccgccgcgccgccggccgcctcacccgcgccgaggccacccgcctc
gtcgccgccatccgccaggtcctggaagcctccatcgcccagggcggcaccaccctccgg
gacttcgtccacgaagacggcgcccacggctacttcagccagtccctccgagtgtacgga
cgcccccaggcaccctgcaccacctgccagacccccatcaagcacatcacccagggcggc
cgatccagctactactgccccacctgccagaaatga
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