Halobacillus halophilus: HBHAL_1123
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Entry
HBHAL_1123 CDS
T02031
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hhd
Halobacillus halophilus
Pathway
hhd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hhd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HBHAL_1123 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhd03021
]
HBHAL_1123 (rpoC)
03400 DNA repair and recombination proteins [BR:
hhd03400
]
HBHAL_1123 (rpoC)
Enzymes [BR:
hhd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HBHAL_1123 (rpoC)
Transcription machinery [BR:
hhd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HBHAL_1123 (rpoC)
DNA repair and recombination proteins [BR:
hhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HBHAL_1123 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
CCG43504
UniProt:
I0JH86
LinkDB
All DBs
Position
134901..138509
Genome browser
AA seq
1202 aa
AA seq
DB search
MLDVNNFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTKAKVRRERMGHLELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFAAYIVTDPGETALERKQLLSEKEYRSYREKFGQGFQAAMGAEAIRKLLF
DIDLEGEVETLKEELKTAQGQRRTRAIKRLEVLESFRHSGNDPSWMILDVLPVIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPTIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQCGLPKE
MALELFKPFVMKELVSRGLAHNIKSAKRKIERVHHEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEREGSVGEGMFFKDLNEALMAYQNGYAHLHTRVAVQ
ASSLGNETFTEEQNQQLLLTTVGKLIFNEMLPNSFPYMNEPTQENLEVKTPDQYFVPKGT
DIRQEISNREEVSPFKKGILGDIIAEVFKRFSISETSKMLDRMKDLGFAYSTKAGITVGV
SDVVVLPEKQEILEEAQGKVDKVLKQFRRGLITDEERYDRVIEIWSGAKDDIQNRLMSSL
NPRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDRGLPVSAITEGSEVIEPLI
DRLIGRTAFQTVKHPETGEVLASRNEVISEDGAKQIVDSGIESIVIRSAFTCNTKHGVCK
KCYGRNLATGDEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIV
EARNPKGQAVITEIDGTVQEVNEVKEKQEIVVQGAVESRSYTAPYGARMKVTVGDAVSAG
SPLTEGSIDPKELLNIQGLDGVQQYLLKEVQKVYRMQGVEISDKHVEVMVRQMLRKVRVL
DAGDTDVLPGSLLEIHQFKEANQKALVEGGQPAVGRPVILGITKASLETDSFLSAASFQE
TTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMTRYRKIQAQSEGAPEQQAQPEEVT
HS
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgtaaacaactttgagtatatgaaaattggtttggcttcacctgataaaatc
agatcttggtcttacggtgaggtcaagaagccagaaacaatcaattatcgtacgctaaaa
cccgaaaaagacgggttattctgcgaaagaatcttcggtccgcaaaaagactgggagtgc
cactgtggtaaatacaagcgtgtccgctataaaggcgtcgtttgtgaccgttgtggtgta
gaagtaacaaaagccaaagtacgtcgtgagcggatggggcacttggaattagctgcccca
gtctcccacatttggtactttaaaggtattccaagccgtatgggtcttgtacttgatatg
tccccgcgtgctttggaagaagtcatttactttgctgcttatatcgtaacggacccaggc
gaaacagcccttgagagaaagcagctgctttctgaaaaggaatatcgttcataccgtgaa
aaattcgggcagggattccaggcagcaatgggtgctgaagctatccgtaaacttcttttt
gatatcgatcttgaaggagaagtagaaactctgaaagaggaattaaaaacagctcagggt
caacgacgtactcgtgctattaaacgtttggaagtactggaatctttccgtcattcagga
aacgatccttcatggatgattcttgatgtactgcctgtcattccaccagagattcgtcct
atggttcaattggatggaggacgtttcgcaacttctgacttgaacgacttatatcgtcga
gtaattaaccgtaacaaccgtcttaaacgcctgttagatttgggggcaccgacgattatc
gtccagaacgagaagcgtatgcttcaagaagctgtagatgctcttattgataacggacgc
cgtggacgtccagttactgggcctggtaaccgtccgcttaaatccctttctcacatgctg
aaaggtaagcaaggtcgtttccgtcaaaacttgctcggtaaacgtgtcgactattccggt
cgttcggttatcgttgtaggtccatccttgaagatgtatcagtgcggacttccaaaagaa
atggcgcttgaattgttcaagcctttcgttatgaaagagctcgtttcccgcggacttgca
cacaacattaaatcagctaagcgtaaaattgagcgcgttcaccatgaagtgtgggatgtt
cttgaagatgttattaaagaacacccggtgttattaaaccgtgcaccaacacttcaccgc
ttaggtatccaggcgttcgaacctaccctggtagaaggccgtgccattcgtcttcacccg
ttggtatgtacagcttataatgctgactttgacggtgaccaaatggcggttcacgtgccg
ttgtcttccgaggcccaggcagaagctcggatcctaatgctggctgctcaaaacattctt
aaccctaaggatggtaagccggtcgttacaccatcacaggatatggtgctaggtaactac
tacctgacgcttgaacgtgaaggatctgttggagaaggaatgttcttcaaagatctcaat
gaagcgttaatggcttatcagaatgggtatgcgcaccttcatacacgggttgccgttcag
gcaagctctttaggaaatgaaacctttactgaagagcagaatcagcagctgcttcttact
acagttggtaagttgatctttaatgaaatgctgcctaattccttcccgtatatgaatgag
ccaacccaagagaaccttgaagtaaaaacaccggatcaatactttgttcctaaaggtaca
gatattcgtcaagaaatatcgaaccgtgaagaagtatctccattcaagaaagggatcctg
ggtgacattattgcagaagtatttaaacgcttctctatcagtgaaacatccaagatgctg
gacagaatgaaagatctcggctttgcttattccactaaagcaggtattacggttggtgta
tctgacgtagtagtacttccagagaaacaagaaattctggaagaagctcaaggcaaagtt
gataaagttcttaaacagtttcgtcgtggtttaattaccgacgaagaacgctatgaccga
gtaattgaaatctggtccggggctaaagatgatattcaaaaccgtttgatgagttccttg
aacccgcgtaaccctatattcatgatgagtgattcaggagcacgtggtaacgcgtccaac
tttactcagctcgctggtatgcgtggtcttatggccaacccggctggacgtattattgaa
cttccaatcaaatcaagcttccgtgaaggcttaacagtacttgagtactttatttccaca
cacggtgcccgtaaaggtcttgcagatacagcactgaaaacagcggactccggttacctg
actcgtcgacttgtcgatgtagctcaagacgtaatcgtccgtgaagatgattgtggtaca
gaccgtggattaccagtaagtgcaattacggaaggttcagaggtaatagaaccgctaatt
gatcgtctgattggccgtacggcattccaaacagtaaaacacccggaaactggtgaagta
ctggcgagtcgtaacgaagttatttctgaagatggtgctaaacaaatcgtagactccggt
attgaaagcattgttatccgctctgccttcacttgtaatactaaacacggcgtatgtaag
aagtgctacggccgtaacctggcaacaggtgacgaagtcgaagttggcgaagcagttgga
atcattgccgctcagtctatcggtgagcctggtacacagcttacaatgcgtaccttccac
actggcggtgttgccggagatgacatcactcaaggtcttccacgtatccaggagattgtg
gaagcacgtaaccctaaaggtcaagccgtgattacagaaatcgacggaaccgtacaggaa
gttaacgaagtgaaagaaaaacaagagatcgtggttcaaggggctgtagagagccgctct
tatacggctccgtatggcgctcgtatgaaagttactgtaggagatgctgtgtccgcagga
agtcctcttacagaaggttccatcgatccaaaagaactgttgaatatccaggggcttgac
ggagttcagcaatatcttcttaaagaagtacagaaagtatatcgtatgcaaggtgttgaa
atctctgacaagcacgttgaagtaatggtccgccagatgcttcgtaaagttcgagtactt
gatgctggagacaccgatgtacttcctggatcacttcttgagatccaccaatttaaagaa
gcgaaccagaaagctcttgtggaaggcggacagcctgcagtgggtcgtccggtcattctt
ggtattaccaaagcatcgcttgaaacagacagcttcctgtctgcggcatccttccaggaa
acaactcgtgtcctgactgatgcagcgattaaaggtaagagagatgaacttctaggattg
aaagagaacgttattatcggtaagcttgtaccagctggtactggtatgacacgctaccgt
aagattcaggctcagtctgaaggagcacctgaacaacaggcccagccagaagaagtcact
cattcttaa
DBGET
integrated database retrieval system
