Halobacillus halophilus: HBHAL_1389
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Entry
HBHAL_1389 CDS
T02031
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hhd
Halobacillus halophilus
Pathway
hhd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HBHAL_1389 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhd03019
]
HBHAL_1389 (cshA)
03009 Ribosome biogenesis [BR:
hhd03009
]
HBHAL_1389 (cshA)
Enzymes [BR:
hhd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HBHAL_1389 (cshA)
Messenger RNA biogenesis [BR:
hhd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HBHAL_1389 (cshA)
Ribosome biogenesis [BR:
hhd03009
]
Prokaryotic type
rRNA helicases
HBHAL_1389 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
SUa-2TM
UvrA_inter
AAA_22
EF-hand_like
Motif
Other DBs
NCBI-ProteinID:
CCG43761
UniProt:
I0JHZ3
LinkDB
All DBs
Position
389822..391294
Genome browser
AA seq
490 aa
AA seq
DB search
MTTFNSLGLSNPILKSLDDMGFEETTPIQEQTIPLGLEGKDVIGQAQTGTGKTAAFGIPM
LEKIDKQVKSVQGLIVAPTRELAIQVAEEMNRLGKVKGVRALPIYGGSNMERQIRSLKTN
QIVVATPGRLLDHIRRKTIKLQNVHTAVLDEADEMLNMGFIEDIRDILKALPEERQTLLF
SATMPKEIRDIATTLMNNPEEVKVKSKEMTVENIEQYFVEIPEKHKFDTLTRLLDIHDPA
LAIVFGRTKRRVDEVADGLQARGFSAEGIHGDLTQGKRMSTLNKFKRGRIEILVATDVAA
RGLDISEVSHVYNFDIPQDPESYVHRIGRTGRAGRKGESISFVTPREKDQLNLIEKLTKK
KVERLKVPSSEEASRGQQKVAVDKLVESLGANDLKNYKHSANELLEQYDSSDIIAAALKM
MTKERSEVPVSLTSVQPISVKNAQRSKGKKNYGKGGNRNYNSKNKSRNRNFNGKGGNRGY
QNKGRNSNAK
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
gtgacaacatttaattcactaggcttatcaaacccaattctaaaatctttagatgatatg
ggctttgaagaaaccacaccgattcaagaacaaacaatacctctagggctggaaggcaaa
gacgtgatcggtcaagctcagacaggtacaggtaaaacagcagcattcggtattccgatg
cttgagaaaattgacaagcaggtcaaatccgttcaaggattgatcgtagctccaactcgt
gaactggctatccaggtcgcagaagagatgaaccgccttggtaaagttaaaggagttcgc
gcactaccaatttatggtgggtcgaacatggaacgccaaatccggtctcttaagacaaat
caaattgtcgtagctacaccgggacgtttacttgaccatattcgccgtaaaactataaag
cttcaaaatgtacacacggctgtactggatgaagcagacgaaatgctgaacatgggtttc
atcgaggatattcgtgacatcctaaaagctcttcctgaagagcgtcagacgctgcttttc
tcagctacgatgcctaaggaaattcgtgatatcgcgacaaccttaatgaataaccctgaa
gaagtaaaagttaaatcaaaagaaatgaccgttgaaaatatcgagcaatactttgtggag
atccctgagaaacacaaatttgacacattgactcgcctgcttgatattcacgaccctgct
cttgccattgtattcggtcgtacgaagcgccgtgtagatgaggtagcggacggtttacaa
gcgcgtggattcagcgcagaaggaatccacggagacctgactcaaggtaagcgtatgtct
acgttgaacaagttcaagcgtggacgtattgaaattctggtagctacagacgtagccgct
cgtggtctggatatttctgaagtatcacatgtgtataacttcgatatccctcaagatcct
gaaagctatgttcaccgcattggacgtacaggtcgtgcgggacgtaaaggtgagtctatt
tctttcgtaacaccacgtgagaaagaccagcttaatttgattgagaagcttacgaagaaa
aaagtggagcgtcttaaagttccttcttctgaagaagcttcccgcggccagcaaaaagta
gcggttgacaagcttgtagaatctcttggtgcaaacgaccttaagaattacaagcattca
gctaacgaattgcttgagcaatatgattcttctgatatcatagcggcagctcttaagatg
atgacgaaagagcgcagcgaagtacctgtcagcttgacttccgtacagccgatcagcgtg
aaaaatgctcagcgcagtaaaggtaagaagaattatggtaaaggcggaaaccgcaattac
aactcgaagaataaatcccgcaaccgtaacttcaacggaaaaggcggcaaccgtggttac
cagaacaaaggacgtaactcaaacgctaaataa
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