Halobacillus halophilus: HBHAL_2803
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Entry
HBHAL_2803 CDS
T02031
Symbol
rnjA
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hhd
Halobacillus halophilus
Pathway
hhd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HBHAL_2803 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhd03019
]
HBHAL_2803 (rnjA)
Messenger RNA biogenesis [BR:
hhd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HBHAL_2803 (rnjA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
RMMBL
DUF4453
Motif
Other DBs
NCBI-ProteinID:
CCG45151
UniProt:
I0JLY1
LinkDB
All DBs
Position
complement(1805206..1806873)
Genome browser
AA seq
555 aa
AA seq
DB search
MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDELLGIDYVIPDYTYL
VQNQDKIKGLFITHGHEDHIGGIPYLLREINIPIYAGKLAAGLLRNKLDEHGLLRNTKMH
TIQEDDVIKFRKTSVSFFRTTHSIPDSYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLAR
MAEIGKEGVLALLSDSTNSEVPGFTKSERVVGQSIDDIFTRVDGRLIFATFASNIHRLQQ
VVESAVKNGRKVAVFGRSMESSIRIGQELGYIRAPKDTFIDAQQINRLPANEVVILCTGS
QGEPMAALSRIANGTHRQIQIMPGDTVVFSSSPIPGNTISVSRTINKLYRAGAEVIHGPL
NDIHTSGHGSREEMKLMLRLIQPRFFMPIHGEYRMLKEHAKLSHDCDLAPEDCFVMDNGD
VLALGKDEAMVAGKIPSGSVYVDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMKEFKI
ASGPDIISRGFVYMRESEDLIKEAQKLVNNHVEKVMERRTTQWSEIKNEITDTIAPFLFE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgtaaaaaatgaccaaacagccgtatttgcccttggcggtctcggcgaaatt
ggaaaaaacacatacggcgttcagtttcaagacgaaatcatcctcattgatgcaggtatt
aaattccctgaagatgaacttctgggaatcgattatgttattcctgattatacctattta
gttcaaaatcaggataaaattaaagggctctttattacgcatggtcacgaagaccatatc
ggcggaatcccttatttactacgtgaaattaacatccctatctatgctgggaaacttgct
gccggcttacttcgaaataagctggatgagcacggcctgcttcgtaacacgaagatgcat
acgattcaggaagatgatgtaattaaatttcgcaaaacatcagtatcctttttccgtacc
acccacagcattccagattcatacggaatcgttgtgaaaacacctccgggtaacattgtt
cataccggagactttaaatttgatttcacacctgtcggagaacctgctaatttagctcgt
atggctgaaattggaaaagaaggggttctcgccctgttatcagatagtacgaatagtgaa
gtacctggctttaccaagtcagaacgtgtagttggacaaagcattgatgatatattcaca
cgtgtagacggacgtttgatatttgcaacatttgcctcaaacatccaccggttacagcaa
gttgtggaatcggcagttaaaaacggcagaaaagttgccgtttttggacgcagtatggaa
tcatccatccgtatcggacaggagctcggttatatccgcgcaccaaaagatacattcata
gatgcgcagcaaattaaccgtcttccggccaacgaagtggttatcctatgtaccggttct
caaggtgagccaatggcagctctatcccgtattgccaatggtacccaccgtcaaattcaa
attatgcctggcgacaccgtcgtgttctcctcttccccaatccctggtaacacgatcagt
gtcagccgcacgatcaataaattgtatcgtgcaggagccgaagttattcacggcccattg
aatgacattcatacatcagggcacggcagccgtgaagaaatgaagctgatgctgcgtctg
attcagccacgcttctttatgccgatccacggtgagtatcgcatgctgaaagaacatgcg
aagttaagtcatgattgtgatttagcccctgaagattgctttgttatggataacggtgat
gtattagctcttggtaaagatgaagcgatggtcgctggtaagattccatctggttctgta
tatgtagatggcagcggaattggcgacattggtaacatcgtactgagagatagacgtatt
ctttctgaagaaggcctcgtaattgtagtggttagtataaacatgaaagagttcaagatc
gcttcaggtccagatatcatctctcgcggattcgtctatatgagagaatcggaagacttg
attaaagaagcgcagaaacttgtaaataatcatgttgaaaaagttatggaacgccgtacg
acacagtggtctgaaattaagaatgagattacagacaccattgcaccattcttatttgaa
aaaacaaaacgacgtccaatgatccttccgatcattatggaagtataa
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