KEGG   Halobacillus halophilus: HBHAL_2803
Entry
HBHAL_2803        CDS       T02031                                 
Symbol
rnjA
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
hhd  Halobacillus halophilus
Pathway
hhd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hhd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HBHAL_2803 (rnjA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hhd03019]
    HBHAL_2803 (rnjA)
Messenger RNA biogenesis [BR:hhd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     HBHAL_2803 (rnjA)
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B Lactamase_B_2 Anti-Pycsar_Apyc1 RMMBL DUF4453
Other DBs
NCBI-ProteinID: CCG45151
UniProt: I0JLY1
LinkDB
Position
complement(1805206..1806873)
AA seq 555 aa
MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDELLGIDYVIPDYTYL
VQNQDKIKGLFITHGHEDHIGGIPYLLREINIPIYAGKLAAGLLRNKLDEHGLLRNTKMH
TIQEDDVIKFRKTSVSFFRTTHSIPDSYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLAR
MAEIGKEGVLALLSDSTNSEVPGFTKSERVVGQSIDDIFTRVDGRLIFATFASNIHRLQQ
VVESAVKNGRKVAVFGRSMESSIRIGQELGYIRAPKDTFIDAQQINRLPANEVVILCTGS
QGEPMAALSRIANGTHRQIQIMPGDTVVFSSSPIPGNTISVSRTINKLYRAGAEVIHGPL
NDIHTSGHGSREEMKLMLRLIQPRFFMPIHGEYRMLKEHAKLSHDCDLAPEDCFVMDNGD
VLALGKDEAMVAGKIPSGSVYVDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMKEFKI
ASGPDIISRGFVYMRESEDLIKEAQKLVNNHVEKVMERRTTQWSEIKNEITDTIAPFLFE
KTKRRPMILPIIMEV
NT seq 1668 nt   +upstreamnt  +downstreamnt
atgaaatttgtaaaaaatgaccaaacagccgtatttgcccttggcggtctcggcgaaatt
ggaaaaaacacatacggcgttcagtttcaagacgaaatcatcctcattgatgcaggtatt
aaattccctgaagatgaacttctgggaatcgattatgttattcctgattatacctattta
gttcaaaatcaggataaaattaaagggctctttattacgcatggtcacgaagaccatatc
ggcggaatcccttatttactacgtgaaattaacatccctatctatgctgggaaacttgct
gccggcttacttcgaaataagctggatgagcacggcctgcttcgtaacacgaagatgcat
acgattcaggaagatgatgtaattaaatttcgcaaaacatcagtatcctttttccgtacc
acccacagcattccagattcatacggaatcgttgtgaaaacacctccgggtaacattgtt
cataccggagactttaaatttgatttcacacctgtcggagaacctgctaatttagctcgt
atggctgaaattggaaaagaaggggttctcgccctgttatcagatagtacgaatagtgaa
gtacctggctttaccaagtcagaacgtgtagttggacaaagcattgatgatatattcaca
cgtgtagacggacgtttgatatttgcaacatttgcctcaaacatccaccggttacagcaa
gttgtggaatcggcagttaaaaacggcagaaaagttgccgtttttggacgcagtatggaa
tcatccatccgtatcggacaggagctcggttatatccgcgcaccaaaagatacattcata
gatgcgcagcaaattaaccgtcttccggccaacgaagtggttatcctatgtaccggttct
caaggtgagccaatggcagctctatcccgtattgccaatggtacccaccgtcaaattcaa
attatgcctggcgacaccgtcgtgttctcctcttccccaatccctggtaacacgatcagt
gtcagccgcacgatcaataaattgtatcgtgcaggagccgaagttattcacggcccattg
aatgacattcatacatcagggcacggcagccgtgaagaaatgaagctgatgctgcgtctg
attcagccacgcttctttatgccgatccacggtgagtatcgcatgctgaaagaacatgcg
aagttaagtcatgattgtgatttagcccctgaagattgctttgttatggataacggtgat
gtattagctcttggtaaagatgaagcgatggtcgctggtaagattccatctggttctgta
tatgtagatggcagcggaattggcgacattggtaacatcgtactgagagatagacgtatt
ctttctgaagaaggcctcgtaattgtagtggttagtataaacatgaaagagttcaagatc
gcttcaggtccagatatcatctctcgcggattcgtctatatgagagaatcggaagacttg
attaaagaagcgcagaaacttgtaaataatcatgttgaaaaagttatggaacgccgtacg
acacagtggtctgaaattaagaatgagattacagacaccattgcaccattcttatttgaa
aaaacaaaacgacgtccaatgatccttccgatcattatggaagtataa

DBGET integrated database retrieval system