Halobacillus halophilus: HBHAL_3834
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Entry
HBHAL_3834 CDS
T02031
Symbol
ytlP
Name
(GenBank) 2'-5' RNA ligase family protein, putative
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
hhd
Halobacillus halophilus
Brite
KEGG Orthology (KO) [BR:
hhd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hhd03016
]
HBHAL_3834 (ytlP)
Enzymes [BR:
hhd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
HBHAL_3834 (ytlP)
Transfer RNA biogenesis [BR:
hhd03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
HBHAL_3834 (ytlP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
CARME
Motif
Other DBs
NCBI-ProteinID:
CCG46178
UniProt:
I0JPV8
LinkDB
All DBs
Position
complement(2796101..2796649)
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AA seq
182 aa
AA seq
DB search
MSAHYFFGIKASTHIQKYLKEWQEILSKSMDYKVWTDPEDLHITIKFLGGCSDEIMKAYL
NELKKQEWPESFFLKVGPAGYFGQLVKPRVFHAEVENETSLQIMKDQIDRTGEKFGFKKE
NRKFNPHITLAKKNAEGCSPLAKEAYSRVFDEEYSMRVEHFYLFRIHPDQNPKYEVVKKF
DL
NT seq
549 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcacactatttttttggaattaaagcctctactcacatacaaaagtacttgaaa
gaatggcaggagatcctttctaaatcaatggattataaggtatggacagatcctgaggac
ttacacattaccataaagtttttaggaggatgttccgatgaaataatgaaagcttatcta
aatgagcttaaaaaacaagagtggccggaatcttttttcttaaaggtgggtccagcaggc
tatttcgggcaactggttaaaccgcgagtgtttcatgcagaggttgaaaatgaaacgtca
ctacaaatcatgaaagatcaaattgatcgtacaggtgaaaagtttggattcaaaaaagaa
aatagaaaatttaatcctcatatcacgctggctaagaagaacgctgaagggtgctctcca
ttagcaaaagaggcatattcccgcgtttttgacgaggagtattcaatgagagttgagcat
ttttatctttttcgtattcatcctgatcagaacccaaagtatgaagtggtcaagaaattt
gacttataa
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