Helicobacter hepaticus: HH_0534
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Entry
HH_0534 CDS
T00133
Name
(GenBank) conserved hypothetical protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hhe
Helicobacter hepaticus
Pathway
hhe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HH_0534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhe03019
]
HH_0534
03016 Transfer RNA biogenesis [BR:
hhe03016
]
HH_0534
Enzymes [BR:
hhe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HH_0534
Messenger RNA biogenesis [BR:
hhe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HH_0534
Transfer RNA biogenesis [BR:
hhe03016
]
Prokaryotic type
tRNA degradation factors
HH_0534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_2nd
OB_RNR_1st
CSD2
YaiO
Motif
Other DBs
NCBI-ProteinID:
AAP77131
UniProt:
Q7VIS0
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All DBs
Position
515008..516852
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AA seq
614 aa
AA seq
DB search
MLENKGEYCILKPHFIIGSVDISRSGKIYIKSLNIKDENDFLLENGRYVKLKKGDIILAK
HTTKKARFITLLYSPKTYTLATLVMKKGVIKALELDTKSGKEHYIELKVSQKSLKALPPH
CVVKVELLSGNIVEVLGVLGDAQIDEKIVLSSYNRVNEFSSNVKEFAQSFGDEVCKEMYP
HRVDLSHLPFCVIDPKDARDHDDAIYFESKTKTLYVAIADVSEYVSCESVLDKEARQRGF
SIYFPHKVVPMLPFELSSGICSLKENKVRLAMVWKITLDKNAQVQKSELLEAFIQSHANV
SYENIESFLQGHKSTLPKEIQKWLKAYLPYIKKHRAMRLQYGYEFQSNEIKLELDEYQNI
SSWHKVEHTLAHSIIEESMLLANVQSALMLINNTQKGIFRIHPPPKEERIQSLLWEIKNM
GFELPSTLDFHSLILAIQNQVKGSNMAEVLDDMIIKSFAKATYSVINIGHFGLGFESYTH
FTSPIRRYSDLIVHRILKALLHKDKSLSFLLEGLNGIAQEMNIKQKQVSHIEQDFYQRKM
LAFTQKLLESILPLICTALVVEEDSYAIALDTIPQIKIALSHSFERFKLVKVQIEKVDLL
CGYVQGRVIESISH
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
gtgcttgaaaataaaggtgaatattgcatacttaagcctcactttattataggcagtgta
gatatttcacgcagtggaaaaatctacatcaaaagcttgaatataaaagatgaaaatgat
tttctccttgaaaatggacgatatgttaagctcaaaaaaggtgatattattctcgcaaag
cacacaacaaaaaaagcgcgttttattacattgctttactcaccaaaaacttataccctt
gctactcttgtgatgaaaaagggggtaattaaagctcttgagcttgatacaaaaagtgga
aaagaacattatatagaacttaaagtctcacaaaaatcgctcaaagctttgcctccgcac
tgcgtggtaaaggttgagcttttatctggcaatattgttgaagtgcttggagtgcttgga
gatgcacaaattgacgaaaaaatagtcctaagctcttataatcgcgtcaatgaatttagc
tctaatgtcaaggagtttgctcaatcttttggcgatgaagtatgtaaagagatgtatccc
catcgtgtagatttaagccacttgcctttttgtgtgatagaccccaaagacgcacgcgac
cacgatgatgcgatttattttgaaagcaaaacaaaaacgctttatgtggctattgccgat
gtaagcgaatatgtaagctgtgaaagtgtgcttgataaggaagcaagacaaagaggtttt
agcatatattttccgcataaagttgtgcctatgctcccctttgagctaagcagcggaatc
tgctcgttaaaagaaaacaaagtgcgtttagcaatggtatggaaaataacgcttgataaa
aacgcacaagtgcaaaaaagtgagctcttagaagcctttatacaatctcacgcaaatgtc
agctatgaaaacatagaatcttttttgcaaggacacaaaagcactctgccaaaagagatt
caaaaatggcttaaggcatatttgccttatatcaaaaaacacagggctatgcgcttgcag
tatggctatgaatttcaaagcaatgaaatcaagttggaacttgatgagtatcaaaatata
agctcgtggcacaaagtagagcacactttggctcatagcatcattgaagaatctatgctc
cttgcaaatgtgcaaagtgcgcttatgctcatcaataatacacaaaagggcatttttaga
atccaccctccccccaaagaagagcgcatacaatcactactatgggaaataaaaaatatg
ggctttgagctaccctctacacttgattttcacagccttatattagctatacaaaaccaa
gtcaaaggaagcaatatggcagaagtgcttgatgatatgattatcaaatcttttgctaag
gcaacttatagtgtcatcaatatcgggcattttggcttaggatttgagagttatacacat
tttacctctcctattcgccgatatagcgacttaatcgtgcatagaatcttaaaagcactt
cttcataaggataaatccctgtctttcttacttgaggggctcaatggtattgctcaagag
atgaacatcaaacaaaagcaagtgagccatattgagcaggatttttatcaacgcaaaatg
cttgcctttacacaaaaactcttagaatctattctacctcttatctgcactgcacttgtg
gtagaagaagattcttatgctattgcgctagatactatcccgcaaataaaaattgctctt
tcacactcatttgagagatttaaacttgtaaaagtgcaaatagaaaaagtggatttgctt
tgtggctatgtgcaaggaagagtaatagaatctatcagtcattaa
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