Helicobacter hepaticus: HH_0545
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Entry
HH_0545 CDS
T00133
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma 70 factor
KO
K03086
RNA polymerase primary sigma factor
Organism
hhe
Helicobacter hepaticus
Pathway
hhe02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hhe00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HH_0545 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhe03021
]
HH_0545 (rpoD)
Transcription machinery [BR:
hhe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HH_0545 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
Sigma70_r4_2
MCR_beta_N
SUI1
Motif
Other DBs
NCBI-ProteinID:
AAP77142
UniProt:
Q7VIQ9
LinkDB
All DBs
Position
complement(523978..525849)
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AA seq
623 aa
AA seq
DB search
MSEKSDKVSKKSKEVNAELESLFKEEDSDYITYEKIAQIILKAPTAAQVKKIKDLSKKYK
KQLLSSSEIAKMLNTQEQIKRQADKKKMLNEELEDEFDFMKDKELLEWSRSDSPVRMYLR
EMGQISLLTKEEEISLSKKIELGENTILDAICSVPYLIDFIYDYKDALINRERRVKELFK
SFDDEEEENEEEEEEFDMLDDEEASRKSNSKKDQKRIEKVMESFKALDKAKKEWLKVLET
PIVEGEDELAHILLLSHKKHILKMKLLDLGPTSKLIGELVKAMENTLKSGDGFERELKRL
EYKLPLFNDMLVENHQKILANITTMSRDEIAAMVPETTMVSVYVELKKLFQTKEASEGGF
NLEPEKLKEILEQIKRGKSISDKAKAKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIG
LMKAVDKFEYKKGFKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINRIHKIMRKHV
QETGKEPDIDFIAKEVGLPIDKVKNVIKITKEPVSLDAPIGSDDDGKFGDFVEDKSSVGP
MDYILKEDLKVQIDEVLEQLNDREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQI
ESSAIKKLKHPKVGRKLKNYIEE
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaaaatccgataaggtcagcaaaaaatcaaaagaagtcaatgctgaattagaa
agtctttttaaagaagaagatagcgattatatcacttatgaaaaaattgcccaaattatc
cttaaagctcctactgctgcacaagttaagaaaattaaagacttaagtaaaaaatataaa
aaacagcttttaagttcgtcagaaattgcaaaaatgctcaatactcaagagcagattaaa
cgtcaagctgataagaaaaaaatgcttaatgaagagcttgaagatgaatttgattttatg
aaagataaggaattgcttgaatggagcagaagtgatagtcctgtgcgtatgtatttgcgt
gaaatgggacaaatttcgcttttgacaaaagaagaagaaatcagtttaagtaaaaaaata
gaattaggtgaaaatactattcttgatgcaatttgctctgtgccttatttgattgatttt
atttatgattacaaagatgctcttatcaatcgtgagcgacgtgtaaaagagctttttaaa
agttttgatgatgaagaggaagagaatgaagaggaagaggaagaatttgatatgcttgat
gatgaagaggcatcacgcaaatctaattctaaaaaagaccaaaaacgtatagaaaaagtt
atggaaagctttaaagcacttgataaggcaaaaaaagaatggctcaaagtgcttgaaaca
ccaatagtagagggagaagatgagttggctcatattttgctcctctcgcataaaaagcat
attttgaaaatgaagcttttggatttaggaccaacaagtaagcttattggtgagcttgtg
aaagcaatggaaaacactctaaagagtggcgatggctttgaacgtgagttaaaacgttta
gagtataaattgccattgtttaatgatatgcttgtggaaaatcatcaaaaaatacttgct
aatatcacaacgatgagtcgtgatgagattgctgcaatggtgccagaaacaacaatggtg
agtgtatatgtagaacttaaaaagctttttcaaacgaaagaagcaagcgaagggggtttt
aatttagagcctgaaaagcttaaagaaattctagagcagattaagcgcggtaagtctatc
tccgataaagcaaaggcaaaaatggcaaaatctaatcttcgacttgtggtaagcattgcc
aaacgctatacaaatcgtggtttgccatttcttgatttaatccaagagggcaatattggg
ctaatgaaagcagtggataagtttgaatataaaaagggctttaagttttcaacttatgct
acttggtggattagacaagcaatttctcgtgctattgccgaccaagcacgcacaattcgc
attcctatccatatgattgagacgattaatagaatccacaagattatgcgcaaacacgtg
caggaaacaggcaaagagccagatattgattttattgccaaagaagtggggttacctatt
gataaggtaaaaaatgtgattaaaatcaccaaagagcctgtaagtcttgatgcacctatt
gggagcgatgatgatggcaagtttggggattttgtagaggataagagctcggttggtcct
atggattacatcctcaaagaggatttaaaagtgcaaattgatgaggtgttagagcagctt
aatgatagggaaaaagcagtcattcgtatgcgctttggattgcttgatgatgaatctgac
cgcactttggaggaaattggcaaagaacttaatgtaacacgagagagggtgcgacaaata
gaatctagtgcgattaaaaagcttaaacacccaaaggtaggaagaaagcttaaaaattac
attgaggaataa
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