Helicobacter hepaticus: HH_1270
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Entry
HH_1270 CDS
T00133
Symbol
dnaE
Name
(GenBank) DNA-dependent DNA polymerase III
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hhe
Helicobacter hepaticus
Pathway
hhe03030
DNA replication
hhe03430
Mismatch repair
hhe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HH_1270 (dnaE)
03430 Mismatch repair
HH_1270 (dnaE)
03440 Homologous recombination
HH_1270 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hhe03032
]
HH_1270 (dnaE)
03400 DNA repair and recombination proteins [BR:
hhe03400
]
HH_1270 (dnaE)
Enzymes [BR:
hhe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HH_1270 (dnaE)
DNA replication proteins [BR:
hhe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HH_1270 (dnaE)
DNA repair and recombination proteins [BR:
hhe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HH_1270 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
DUF655
Motif
Other DBs
NCBI-ProteinID:
AAP77867
UniProt:
Q7VGQ0
LinkDB
All DBs
Position
complement(1231084..1234740)
Genome browser
AA seq
1218 aa
AA seq
DB search
MSFTHLHLHTEYSLLDGANKIKFLAKRIRELGMESVAITDHGNMFGALDFYVSMKEEGLN
PIIGMEAYLHNGDTLGDKTIKQRFHLCLFAKNEIGYKNLMYLSSQSFIEGFYYYPRINKA
LLRERSEGLVCSSACLQGEINWQLNTSNQRNVRFGAKGYEVAKEVALEYKDIFGEDFYLE
LMRHGINDQLFIDEQILKLGRELDIKVIATNDTHYSLQEDASAQEVAMCVAMGKTFNDKD
RLKHSVKEFYVKSPQEMQKLFCDVPEVLENTQEIAQKCQLHLDLKNIEIKNKHTGEILLK
NTPATPPTFKHTTNYALKENLPQILNCSLESIDDAVYFAFKCRQGLEERLKHIPTESHPI
YKKRLEHEIEVISSMKFPGYMLIVWDFVNFAKQNNIPVGPGRGSAAGSLVAYSLKITNID
PLKYDLLFERFLNPERVSMPDIDMDFCQRRRGEMIEYVANTYGKFNVAQVITFGSLLAKG
VIRDVARVLNMPYNDADAFAKLIPAELGITLTKHIGKDGKEKDGAWEKESRIKELVEKSP
LAKQVWDYALLLEGLKRNAGTHAAAIVIDSQEELWHKVPLYTNDKMNGVATQYSMNWLEP
VDLIKFDFLGLKTLTVIDDAINLIKKRYEKEIDFSTMEMDDYKVYETIQSGNTLGLFQIE
SEGMQAIAKRLKPSNFEDVVAMISLYRPGPMDLIDDFVARKHGLVKIEYLIDALEPILKP
TYGVIVYQEQVMQIVQTIGGFSLGGADLVRRAMGKKKLDEMLRLKKEFADGAQKQGYNRA
KAEDLWEIIVKFAGYGFNKSHAAAYGMITYQTAYLKTYYEHEFMAAMLTSETNKIESIAK
YIDEVKSLGIEIVPPHVNISENNFGVGEFDGVKKIIFGLSAIKGLGDAPIENIIEEREKN
GAYKSLEDFVARVDFSKLTKRSLEPLIKSGGLDNLGYSRKSMLEYIDILCDKGREKSKAQ
EMIHNSLFGEDEVEINIYLPITHKGEYDIRTLLDYEYECMGIYISGHPLDDFKDKLKNIK
GIIKSLELENLEFNSVCMLVGKVLSIKRRISKKSNKPFGSIDFLDYGGKIEIMVFEKHLE
ALEGFNLDEPLALKCKIEEREERFNVRILKILNLEEAAKEKIEPIIKNIAQEDEDTKIIP
LDMKPSEIDVCTPLCVVIDASCVENGILDKLKAYSKELKGERELRVRIKNDTLGYTFISH
LKVHSQIKEAFKELEWQE
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgagctttacacatcttcatcttcataccgaatactccttacttgatggcgcaaataaa
attaaattcctagctaaacgcattcgtgaattaggtatggaatctgttgcgattactgac
cacggcaatatgtttggtgcgcttgatttttatgtaagtatgaaagaagaggggcttaat
cccattatcggtatggaagcctatctgcataatggcgatacactcggtgataaaacaatc
aagcagcgattccatctctgcctctttgccaaaaatgaaataggttataagaatctaatg
tatctctcctcacaatcttttattgagggattttattactatcctcgtattaacaaagct
ttactaagagagaggagcgaagggcttgtttgctcttcagcctgcctacaaggcgagata
aattggcaacttaataccagcaatcaacgcaatgtgcgatttggagcaaaaggttatgaa
gtagccaaagaagtagcattagaatacaaagatatttttggtgaagatttttaccttgag
cttatgcgacacggcattaacgaccaacttttcattgatgagcagattctaaagcttggc
agagagcttgatattaaagtgattgcgacaaatgatacgcattattctttgcaagaagat
gcaagtgcgcaagaagtagcaatgtgtgtggcaatgggtaaaacatttaacgacaaagat
agactaaaacattcagttaaagaattttatgttaaatccccgcaggagatgcaaaagctc
ttttgtgatgtgcctgaagtgctagaaaatacgcaagaaattgcgcaaaaatgccaactt
catttagatttgaaaaatattgagattaaaaacaaacatacaggtgagatactattaaaa
aatactccagcaacccctcctacttttaaacataccacaaattatgcgcttaaagaaaat
ttgccacagattcttaattgctctttagaatctattgatgatgcagtgtatttcgccttt
aaatgtcgtcaagggctagaggagcgacttaaacatatccccacagaatctcaccctata
tataaaaaacgtctagaacacgagatagaagtgattagttcaatgaaatttcccggctat
atgctcattgtgtgggattttgtcaattttgcaaaacaaaataatatccccgtgggaccc
ggacgtggttcagcagcaggcagtctcgtagcgtattcacttaagattacaaatattgac
ccgcttaaatatgatttactttttgaacgatttttgaatcccgagcgggtaagtatgccc
gatattgatatggatttttgccaacgcagacgcggcgagatgatagaatatgtagcaaat
acttatggcaagtttaatgtcgcacaagttattacctttggttcgctccttgcaaaaggt
gtgatacgagatgtcgcacgtgtgcttaatatgccctataatgatgctgatgcttttgca
aaacttatcccagcagagcttggtatcacccttacaaaacacataggtaaagatggtaaa
gaaaaagatggtgcgtgggaaaaagagtcgaggattaaagaacttgtagagaaaagtcct
ttagcaaaacaagtatgggattatgccttgttgcttgaaggattaaaacgcaatgccggc
acacacgctgcagctattgtaatagattcccaagaagaactatggcacaaagtccctctt
tatacaaatgataaaatgaatggtgtcgctacgcagtattctatgaattggcttgagcct
gtggatttaattaaatttgactttttaggacttaaaacgctcactgtaattgatgatgca
attaatcttattaaaaagcgatacgaaaaagaaattgactttagcacaatggaaatggac
gattacaaagtctatgaaacaatccaaagcggaaatacgctcggactattccaaatagaa
tctgaaggtatgcaagcaatagcaaaaaggctcaaaccaagcaattttgaagatgtggtg
gcaatgatttccctctatcgtccaggacctatggatcttattgatgattttgttgcgcgt
aagcacggattggtaaaaattgagtatctcatagacgccctagagcctattttaaaacct
acctatggtgttattgtctatcaagagcaagttatgcaaattgtgcaaaccattggtgga
ttttctcttggcggtgcagatttagtccgccgtgctatggggaaaaagaagcttgatgaa
atgttaagactaaaaaaagaatttgctgatggagcacaaaagcaaggctataatcgtgct
aaagcggaggatttatgggagattatcgtaaaatttgctggctatggattcaataaatct
cacgccgcagcctatggaatgatcacctatcaaactgcatatttaaaaacttattatgaa
cacgaatttatggcagctatgctcacaagtgagacaaataaaatagaatctatagcaaaa
tacattgatgaggtaaaatctcttggtattgagattgtccctccacacgtgaatatttct
gaaaacaattttggtgtgggtgaatttgatggagtgaaaaaaatcatttttggactaagc
gctattaaaggactaggcgatgcacctattgaaaatatcatagaagagcgtgaaaaaaat
ggtgcatacaagagtttggaagatttcgtcgcaagggtagatttctctaaacttacaaaa
cgctctttagagccattgattaaatctggaggattagataatctaggctactcgcgtaaa
agtatgcttgaatatatagatatactctgtgataaagggcgagaaaaaagtaaagcacaa
gaaatgatacataattcactctttggtgaagatgaggtagagattaatatatacttacct
atcactcataaaggtgaatatgatatacgcactttgcttgattatgagtatgaatgtatg
ggaatctatatatcaggacatcctcttgatgactttaaagacaaactcaaaaatatcaaa
ggtataatcaaaagtcttgaattagagaatctagaatttaattctgtatgtatgcttgta
ggcaaggttctttcaatcaagcgaagaatcagcaaaaaaagcaacaaaccttttgggagt
attgattttctagattatggtggaaaaattgaaataatggtgtttgaaaagcaccttgaa
gcacttgaaggattcaatcttgatgagcctttggcacttaaatgcaaaatagaagagaga
gaagaaagatttaatgtgcgtattttaaagattcttaatcttgaagaagctgctaaagaa
aaaatagagcccataataaaaaatattgcacaagaagatgaagatacaaagattatccca
cttgatatgaagcctagtgagattgatgtttgcacacccttatgcgtggttattgatgcg
agctgcgttgaaaatggcattttagataaacttaaggcttactcaaaagagcttaagggt
gaacgtgagttacgagtgcgtattaaaaatgatacattgggctatacttttattagtcac
ctcaaagttcattcgcaaattaaagaagcatttaaagaattagagtggcaggaataa
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