Helicobacter hepaticus: HH_1798
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Entry
HH_1798 CDS
T00133
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hhe
Helicobacter hepaticus
Brite
KEGG Orthology (KO) [BR:
hhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hhe03032
]
HH_1798 (topA)
03400 DNA repair and recombination proteins [BR:
hhe03400
]
HH_1798 (topA)
Enzymes [BR:
hhe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HH_1798 (topA)
DNA replication proteins [BR:
hhe03032
]
Prokaryotic type
DNA Topoisomerases
HH_1798 (topA)
DNA repair and recombination proteins [BR:
hhe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HH_1798 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
DUF1272
ADK_lid
DUF7340
zf_C2H2_13
Motif
Other DBs
NCBI-ProteinID:
AAP78395
UniProt:
Q7VF79
LinkDB
All DBs
Position
1718740..1720989
Genome browser
AA seq
749 aa
AA seq
DB search
MKDLIIVESPAKARTIKNFLGSKYEVIASKGHIRDLPKYTFGIDIKDKTFHPQYTISKDH
MEIVEKIKVASKKAKVTYIATDEDREGEAIGFHITQALNLPYEKIPRIVFHEITKNAITH
SLQNPRQIDMAKVNAQQARRLLDRIVGFKLSELISSKIQRGLSAGRVQSSALKIIVDRER
EIRAFKPTIYFLINAVFNMKPKSKQKNQDNGQNNIEAELITYDKKLEKLSLQNFEAVEAM
LEHIQKQQFFIKEIITKSKKISTPPPFMTSTLQQSASSLLGFSPSRTMSIAQRLYEGVET
NFGSMGVITYMRTDSLNIAKEAQKAAREMIIKTYGKEYVPAKTKNYATKSKAAQEAHEAI
RPTNLDFTPEIAKSYLKPEEHKLYALIYYRFLASQSQDALFEIQNIIFTPHNQTHLIEFK
ASGRKLVYDGFYKIMGNDDKDKLLPECKEGEDVLLNNIESVQKSTEAPSRYSEASIIKSM
ESLGIGRPSTYAPTIALLVAREYVNIEKKQLVPQESAFKVIEMLESYFDEIVDTHFTAGL
EDKLDEIAQAKMNWESVLWEFYQPFMQKIESGKKVIVSQKVAIPTGEMCPKCGKELVQRK
SKYGEFIACSGYPKCKYIKPTQQDSQSQSQEYGVCEKCGEPMIKKFGRNGEFIACSGYPK
CKNTKSLTDKAQAHSVEGVVCPECEGEIVKRFSRRGAFYGCKNYPKCTFISKFEPIKEKC
PQCGGISVEREYRKKQVRECLKCKHRIEI
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttaatcattgtagaatcgcccgccaaagcaaggacgattaaaaatttttta
gggagtaaatatgaggttatagcctctaaaggtcatatccgagacttgccaaaatatact
tttggcattgatataaaggataaaacattccacccacaatacactatcagtaaagaccat
atggagattgttgagaaaattaaggttgctagcaaaaaagcaaaggtaacttatattgca
acagatgaggatagagagggggaggctatcggttttcatattactcaagctctaaatctc
ccttatgaaaaaatcccacgcattgtgtttcacgagattacaaaaaatgctattacgcac
tcattgcaaaatccgcgtcaaattgatatggcaaaggtaaatgctcaacaagcacggcgg
ttgcttgataggattgttggttttaaactttccgaacttatttcttccaagattcagcgt
ggattatcagcaggacgtgtgcaaagttctgcgcttaagattattgtggatagggaacga
gagatacgcgcctttaagccgacaatttattttttaattaatgcagtttttaatatgaaa
cctaagagtaagcaaaaaaaccaagataatggtcaaaataatatagaagccgaactcatc
acttatgacaaaaagcttgaaaagctctctttgcaaaattttgaggcggtagaggcgatg
ttggagcatatccaaaagcagcaattttttattaaagaaattatcacaaaaagtaagaaa
atatcaacacctccaccatttatgacttctacattacaacaaagtgcctcaagtttatta
ggattttctccctcacggacgatgagtattgcacaacgactttatgaaggtgtggaaacg
aattttggaagtatgggggtaattacctatatgaggacagatagtcttaatattgccaaa
gaagcgcaaaaagccgcaagagaaatgattataaaaacttatggcaaagaatatgttcct
gctaaaaccaaaaattacgctaccaaatccaaagctgcacaagaagctcacgaagcgata
cgaccaaccaatcttgattttactccagaaatcgcaaaatcttatcttaagccagaagag
cataagctttatgcacttatttattatcgttttttggcttcacaaagtcaagatgcgctt
tttgagatacaaaatattatttttacacctcataatcaaacacatttgattgaatttaaa
gcaagtgggcgcaaacttgtttatgatggattctataagattatgggaaatgatgacaaa
gataagcttttgcccgaatgcaaagagggcgaagatgtgttattaaataatatagaatct
gttcaaaaatccaccgaagctccgtcgcgttattctgaagcaagcattattaaaagtatg
gaatcacttggtattggtcgtccctccacttatgcaccaactattgcattgcttgtggca
cgagaatatgtgaatatagaaaaaaagcagcttgtgccgcaagaaagtgcatttaaggtg
atagaaatgttggaatcttattttgatgagattgtagatacccattttaccgccggatta
gaagataagcttgatgaaatcgctcaagcaaaaatgaattgggaatctgtgctgtgggag
ttttatcagccatttatgcaaaagatagaatctggcaaaaaagtgattgtctcacaaaaa
gttgctattcctacaggagagatgtgtccaaaatgtgggaaagagcttgtgcaacgcaag
agcaaatatggtgaatttatcgcgtgtagcggttatcccaaatgtaaatatattaaacct
acacaacaagattctcaatcgcaatcccaagaatatggtgtatgtgaaaaatgtggcgaa
cctatgataaaaaagtttggtcgtaatggtgaatttatcgcgtgtagcggttatcccaaa
tgtaaaaatacaaaatctctcacagacaaagcacaggctcatagtgttgaaggtgtggtt
tgtccagaatgcgaaggagagattgtaaaaagatttagccgcaggggagcgttttatggc
tgcaagaactatccaaaatgcacttttatctcaaaatttgagcctatcaaagagaaatgt
ccgcaatgtggcggaataagcgtagagcgtgaatatcgcaaaaaacaagtgcgcgaatgt
ctcaaatgcaagcatagaatagaaatataa
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