Herbaspirillum huttiense: E2K99_00020
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Entry
E2K99_00020 CDS
T05937
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
hhf
Herbaspirillum huttiense
Brite
KEGG Orthology (KO) [BR:
hhf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hhf03032
]
E2K99_00020 (gyrB)
03400 DNA repair and recombination proteins [BR:
hhf03400
]
E2K99_00020 (gyrB)
Enzymes [BR:
hhf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
E2K99_00020 (gyrB)
DNA replication proteins [BR:
hhf03032
]
Prokaryotic type
DNA Topoisomerases
E2K99_00020 (gyrB)
DNA repair and recombination proteins [BR:
hhf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
E2K99_00020 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
Toprim_4
HATPase_c_3
hDGE_amylase
DUF7061
Motif
Other DBs
NCBI-ProteinID:
QBP73505
LinkDB
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Position
3326..5824
Genome browser
AA seq
832 aa
AA seq
DB search
MSSSPADNTNSAQQSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID
EALAGYCSEIHVTIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFD
QNSYKVSGGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVSP
IKVVGESDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE
DFAFEGGTRGFVEYINKNKSILNPTIFQATGEKQSDQGTLVSVDVSMQWNDAFNEQVLCF
TNNIPQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDMREGLTCVLSVKVPE
PKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKIVEAARAREAARKAR
ELTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGK
VLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIIIMTDADVDGAHIRTL
LLTLFYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQYMMQIALNDAEIKPS
EGAAPISGEALVELARQYNTANAIIMRLSRAIDESALNAIMTGGVALKMDNIEQATATAE
ELKKAINDINIDVQARVDEHSEKVALHIHRRQHGNIKATVIDADFVSGPDYQQLSTAAET
FKGLIGKGAIVARGQGEKRKESVITEFRQAMSWLRDEAERGVNKQRYKGLGEMNPEQLWE
TTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQAGNIDV
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccagccccgcagacaacaccaattccgcgcaacaaagctatggcgcttcttcc
atccagatcctggaaggcctggaggcggtgcgcaagcgtcccggcatgtacattggcgac
acctctgacggcaccggcctgcaccacctggtgttcgaagtgctggacaactcgatcgac
gaagccctggccggctattgcagcgagatccacgtcaccatccacgccgacaattccatc
tcgatcaccgacaacggccgcggcatccccaccggcctgaagatggacgacaagcacgaa
cccaagcgttctgcggccgaaattgtgatgaccgaactgcacgccggcggcaagttcgac
cagaactcttacaaggtctccggcggcctgcacggcgtgggcgtgtcctgcgtgaatgca
ctgtccaagaagctgaagctcaccatccgccgcgacggcaaggtccacgcgatggaattc
gccaagggcatcgtgcagaaccgcgaactggagatggtggatggcgtgcaggtctcgccg
atcaaggtcgtgggcgaatccgacaagcgcggcaccgaagtccacttctgggccgacgaa
gaaatcttcacgcacgtcgaattccactacgagatcctggccaagcgtattcgcgaactg
tccttcctgaacaatggcgttcatatcaagctgaccgaccagcgtaccggcaaggaagag
gacttcgcctttgaaggcggcacgcgcggcttcgtggaatacatcaacaagaacaagagc
atcctgaacccgaccattttccaggctacgggcgagaagcaatccgaccagggcacgctg
gtgtcggtggacgtgtcgatgcaatggaacgatgccttcaacgagcaggtgctctgcttc
accaacaacatcccgcagcgtgacggtggcactcacctgaccggcctgcgtgcggccatg
acccgcgtcatcaacaagtacatcgaagaaaacgatctcgccaagaaggccaaggtcgag
atctccggcgacgacatgcgcgaaggcctgacctgcgtgctgtcggtgaaggtaccggaa
ccgaagttcagctcgcagaccaaggacaagctggtctccagcgaagtgcgcggcccggtg
gaagaaatcgtcgccaagaccctgaccgacttcctggccgagaagccgaacgatgccaag
atcatctgcggcaagatcgtcgaagccgcgcgtgcccgcgaggctgcgcgcaaggcgcgc
gaactgacgcgccgcaagggtgtgatggatggcctgggtttgtcttccaagctggctgat
tgccaggaacgcgacccggccctgtgcgagctgtacatcgtcgagggtgactccgcaggc
ggctcggccaagcaagggcgggaccgcaagttccaggccatcctgccgctgcgcggcaag
gtgctgaacgtggagaaggcgcgcttcgagaagatgctttcttccgagcagatcaccacg
ctcatcgcgaccctgggcaccagcatcggcgctgacgaattcaatccggacaagctgcgt
taccaccgcatcatcatcatgaccgatgcggacgttgacggcgcccacatccgcacgctg
ctgctgacgctcttctatcgccagatgccggcgctggtcgaacgcggccacatctacatc
gcccagccgccgctgtacaaggtcaaggcgggcaaggacgagcgctacttgaaggacgat
ttcgaggaagcgcagtacatgatgcagatcgccctgaacgatgccgagatcaagccttct
gaaggtgctgcgccgatcagcggcgaggcgctggtggaactggcacgccagtacaacacg
gccaacgcgatcatcatgcgcctgtcgcgcgccatcgatgaatcggcgctgaacgccatc
atgaccggcggcgtggccctgaagatggacaacatcgagcaggccaccgccactgcggaa
gaactgaagaaggccatcaacgacatcaacatcgacgtgcaggcgcgcgtggatgagcat
agcgagaaggtggcgctgcatatccatcgccgccagcatggcaacatcaaggcgaccgtg
atcgatgcggactttgtgagcggtccggattaccagcagttgtcgacggcggccgagacc
ttcaagggactcatcggcaagggcgccatcgtggcacgcggccagggcgagaagcgcaag
gaatcggtcatcaccgaattccgccaggccatgtcgtggttgcgtgatgaggccgagcgc
ggcgtgaacaagcagcgttacaaaggtctgggcgagatgaaccctgagcagctgtgggaa
accaccatggatccgaccgtgcgccgtttgctgaaggtgcagatcgaggatgcgattgct
gcggatcagatcttcatgaccttgatgggcgatgatgtggagccgcgtcgggcgtttatt
gaatccaatgcgttgcaggcggggaatattgacgtttga
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