Herbaspirillum huttiense: E2K99_00120
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Entry
E2K99_00120 CDS
T05937
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hhf
Herbaspirillum huttiense
Brite
KEGG Orthology (KO) [BR:
hhf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hhf03016
]
E2K99_00120
Enzymes [BR:
hhf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
E2K99_00120
Transfer RNA biogenesis [BR:
hhf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
E2K99_00120
Prokaryotic type
tRNA splicing ligases
E2K99_00120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QBP73524
LinkDB
All DBs
Position
complement(30308..31561)
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AA seq
417 aa
AA seq
DB search
MEKLDNIAPASYDTLATGQGKPVKMWTRGVPVEAEAKTQLGNTAKMPFIYKHIAVMPDVH
VGKGSTIGSVIPTLGAIIPAAVGVDIGCGMMAAKTTLCAADLPDNLGPLRSAIERAVPHG
SSPRTRSHRGRDQGSWEHPPAPVDTAWQTLKDEFDVLCQKTPKLEKTNHYKHLGTLGSGN
HFIEICLDEGGAVWFMLHSGSRGVGNAIGTHFIELAQQDMRKHMVNLPDRDLAYLKEGST
HYDDYLQAVGWAQKFARMNREVMMQNLIAAVRSVIAKPFQTHVEAVNCHHNYVQKEHHFG
QDVLVTRKGAVSARAGELGIIPGSMGARSFIVRGKGEAESFHSCSHGAGRTMSRTEAKKR
FSVEDHIRATEGVECRKDEAVIDEIPMAYKDIDAVMAAQQDLVEVVHTLRQIVCVKG
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaactcgacaacatcgcaccagcgtcctacgacaccctggccaccgggcagggc
aagccggtcaagatgtggacccgcggcgtgccggtggaagctgaggcaaaaacccagctg
ggcaatacggccaagatgccgttcatctacaagcacattgcggtcatgccggatgtgcac
gtgggcaagggctccaccatcggcagcgtgatcccgaccctgggcgcgatcattcccgcc
gccgtgggggtcgatatcggctgcggcatgatggcggccaagaccaccctgtgcgccgcc
gacctgccggacaacctgggtcccttgcgcagtgccatcgaacgcgccgtgccgcacggt
tcctcgccacgcacgcgcagccatcgcggccgcgatcagggttcctgggaacatccgccg
gcaccggtcgataccgcatggcagacgctgaaggatgagttcgacgtgctgtgccagaag
acgcccaagctggagaagaccaaccactacaagcacctgggcacgctggggtcgggcaat
cacttcatcgagatctgcctggatgaagggggcgcggtctggttcatgctgcactcgggt
tcgcgcggcgtgggcaatgccatcggcacccacttcatcgaactggcgcagcaggacatg
cgcaagcacatggtcaacctgccggatcgcgacctggcctatctgaaggagggcagcacg
cactacgacgactatctgcaagccgtgggctgggcacagaaatttgcgcgcatgaaccgt
gaagtgatgatgcagaacctgatcgccgctgtacgcagcgtgatcgccaagcctttccag
acgcacgtggaggcggtcaactgccaccacaattacgtgcagaaggaacatcacttcggc
caggatgtgctggtcacccgcaagggtgcagtatcggcccgtgccggcgaactgggcatc
attcccggctcgatgggggccaggagcttcatcgtgcgcggcaagggcgaggccgagagc
ttccacagctgcagccacggtgcgggacgcaccatgagccgtaccgaggccaagaagcgc
ttctcggtagaggatcacatccgcgccaccgaaggtgtggagtgccgcaaggacgaagcc
gtcatcgacgaaatcccgatggcctacaaggacatcgatgccgtcatggcggcccagcaa
gacctggtggaagtggtgcatacgctgcgccagatcgtctgcgtgaaaggctga
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