Herbaspirillum huttiense: E2K99_00740
Help
Entry
E2K99_00740 CDS
T05937
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hhf
Herbaspirillum huttiense
Pathway
hhf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hhf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E2K99_00740 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhf03021
]
E2K99_00740 (rpoC)
03400 DNA repair and recombination proteins [BR:
hhf03400
]
E2K99_00740 (rpoC)
Enzymes [BR:
hhf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E2K99_00740 (rpoC)
Transcription machinery [BR:
hhf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E2K99_00740 (rpoC)
DNA repair and recombination proteins [BR:
hhf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E2K99_00740 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
QBP73625
LinkDB
All DBs
Position
159224..163465
Genome browser
AA seq
1413 aa
AA seq
DB search
MKALLDLFKQVQQNEQFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFIAFM
GAEGIRELLRSIDIDREAETLRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPDWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLELMGLSTTIKAAKKLVEAQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINGKNEGMMFQDVSEVIRAYDNK
EVELATRITVRIVEHPKDPVTGEFVRTVKRYETTIGRAILSEILPKGLPFSVLNRALKKK
EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKATLIAAAES
EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDEVGKAMMDQLKVEDVITREGKKTTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGSAMKALVEGGEVIEALRDRI
LGRVAATDIVNPEDQSTLFEAGTLLDEDKVEEIERMGIDEVKVRTPLTCDTRYGLCAKCY
GRDLGRGLLVNSGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR
FTATMRYVTNGKGEQIVISRSGEVLITDDLGRERERHKVPYGATLIVKDGLTIKAGTALA
TWDPLTRPIITEYSGTVKFENVEEGSTVAKQIDEVTGLSTLVVIDAKRRGPSSKVMRPQV
KLLNEQGEEVKIAGTEHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMEGTKHEFLITKDKQVLVH
DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQVVEPGDTNYITGEQVERSELLDENDRVTAEGKIPATYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTGLAFHRARKEKDAWEAEE
RAALLEAERASRSDFADEEVSSTESIGGGEGEA
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgctcgatctattcaagcaagtccagcaaaacgaacaattcgacgcgatc
aagatcggtctggcttcgcctgacaagatccgctcgtggtccttcggcgaagtcaagaag
ccggaaaccatcaactaccgtaccttcaagcctgagcgcgacggcctgttctgcgccaag
atcttcggccccatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggcgtggaagtgaccctggccaaggtgcgccgtgag
cgcatgggccacatcgagctggcttccccgactgcccacatctggttcctgaagtcgctg
ccgtcccgtctgggcatggtgctggacatgaccctgcgcgacatcgagcgcgtgctgtac
ttcgaagcctacgtcgtgaccgatcctggcatgaccccgctgaagaagtgccagatcatg
tccgaagacgactacgccgccaagtacgaagagtacggcgacgacttcatcgccttcatg
ggcgccgaaggtatccgcgaactgctgcgctcgatcgacatcgaccgcgaagcggaaacc
ctgcgccaggaactgaaggactccaagtccgaagccaagatcaagaagtacgccaagcgc
ctgaaggtgctggaggcgttccagcgctcgggcatcaagcccgactggatgatcatggaa
gtgctgcccgtgctgccgccggaactgcgtccgctggtgccgctggatggcggccgcttc
gcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgtctgaag
cgcctgatggagctgcgtgctccagaaatcatcacgcgcaacgaaaagcgcatgctgcag
gaagcggtggactcgctgctggacaacggccgtcgcggcaaggccatgaccggcgccaac
aagcgcccgctgaagtcgctggccgaaatgatcaagggcaagggcggccgtttccgtcag
aacttgctgggcaagcgcgtggactactccggccgttcggtcatcgtggtgggcccgcag
ctgaagctgcaccagtgcggcctgcccaagctgatggccctggaactgttcaagcccttc
atcttcaacaagctggaactgatgggtctgtcgaccaccatcaaggccgccaagaagctg
gtggaagcgcaagagccggtggtctgggacatcctggaagaagtcatccgcgaacacccg
gtcatgctgaaccgcgcgccgaccctgcaccgtctgggcatccaggcgttcgagccggtc
ctgatcgaaggcaaggcgatccagctgcacccgctggtttgcgcggcgttcaacgccgac
ttcgacggcgaccagatggctgtccacgtgccgctgtcgatcgaagcgcagatggaagcc
cgcaccctgatgctggcctccaacaacatcctgttcccgtccaacggcgaaccgtcgatc
gtgccgtcccaggatatcgtgctgggtctgtactatgccacccgtgaagccatcaacggc
aagaacgaaggcatgatgttccaggacgtgtcggaagtcatccgcgcttacgacaacaag
gaagtcgagctggccacccgtatcactgtgcgtatcgtggaacacccgaaggatccggtc
accggcgaattcgtgcgtaccgtcaagcgctacgagaccaccatcggccgcgccatcctc
tccgagatcctgcccaagggcctgccgttctcggtgctgaaccgcgcgctgaagaagaag
gaaatctccaagctgatcaacacgtccttccgcaagtgcggtctgcgtgccacggtcgtg
tttgccgaccagctgatgcagtcgggcttccgcctggcgactcgcgccggtatctccatc
tgcgtggacgacatgctggtgccgccgcaaaaggccaccctgatcgcggctgccgaatcg
gaagtcaagcagatcgaacagcagtactcctccggtctggtgaccgcaggcgagcgctac
aacaaggtcgtggacatctggggcaaggccggtgacgaagtcggcaaggccatgatggac
cagctgaaggtggaagacgtcatcacccgcgaaggcaagaagaccactcaggaatcgttc
aacgcgatttacatgatggccgactccggcgcccgtggttcggcggcccagattcgccag
ctggccggtatgcgcggcctgatggccaagcctgacggctccatcatcgaaacgccgatt
accgcgaacttccgcgaaggcctgaacgtgttgcagtacttcatctcgacgcacggcgcc
cgtaagggtctggccgacaccgcgctgaagaccgcaaactccggttacctgacccgtcgt
ctggtggacgtgacccaggatctggtcgtgatcgaagacgattgcggcacttccaacggt
tcggccatgaaggcgctggtcgaaggcggtgaagtcatcgaagccctgcgcgaccgtatc
ctcggccgtgtggctgcgaccgacatcgtcaacccggaagatcaatccaccctgttcgaa
gccggcaccctgctggacgaagacaaggtcgaagagatcgaacgcatgggtatcgacgaa
gtgaaggttcgtactccgctgacctgcgacacccgctatggcctgtgcgccaagtgctat
ggccgcgacctgggccgtggcctgctggtgaactccggcgaagccgtcggtgtggtggct
gcgcagtccatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggt
gcggcatcgcgtgcagcggtggcctcctcggtggaagccaagtccaacggcaccgtgcgc
ttcaccgccacgatgcgttacgtgaccaatggcaagggcgaacagatcgtcatttcccgt
tccggcgaagtgctgatcaccgacgacctgggccgtgagcgcgagcgtcacaaagtgccg
tacggcgccaccctgatcgtcaaggatggcctgaccatcaaggccggtaccgccctggca
acctgggatccgctgacccgtccgatcatcaccgagtactccggtaccgtgaagttcgaa
aacgtggaagagggctccaccgtggccaagcagatcgacgaagtcaccggtctgtcgacc
ctggtggtcatcgatgcgaagcgccgtggtccttcctcgaaggtcatgcgtccgcaggtg
aaactgctgaacgaacaaggcgaagaagtgaagatcgccggcaccgaacactcggtgacc
atcggcttccaggtcggcgcgctgatcaccgtcaaggacggccagcaagtgcatgtgggt
gaagtgctggcccgtatcccgaccgaatcgcagaagacccgtgacattaccggtggtctg
ccgcgcgtggccgagctgttcgaagcccgttcgccgaaggatgccggcatgctggccgaa
gtcactggtaccgttgccttcggcaaggaaaccaagggcaagcagcgtctggaaatcacc
gacatggaaggcaccaagcacgagttcctgatcaccaaggacaagcaagtgctggtgcac
gacggccaggtggtgaacaagggcgaaatgatcgtcgacggtccggccgatccgcaggac
atcctgcgtctgctgggtatcgaagcgctggctcgctacatcgtggacgaagtgcaggac
gtgtaccgtctgcagggcgtgaagatcaacgacaagcacatcgaagtgatcgtgcgccag
atgctgcgccgcgtgcaagtggtggagccgggcgacaccaactacatcaccggtgagcag
gtcgagcgctccgaactgctggacgagaacgaccgcgtgaccgccgaaggcaagatcccg
gcgacctacgaaaacgtgctgctgggtattaccaaggcatcgctgtcgaccgactccttc
atctcggccgcatcgttccaggaaaccacccgcgtgctgaccgaagcggcgatcatgggc
aagaaggacggcctgcgcggtctgaaggaaaacgtcatcgtcggccgcctgatcccggcc
ggtaccggcctggccttccaccgcgcccgcaaggaaaaggatgcatgggaagccgaagag
cgcgcagcactgctcgaagccgaacgtgcctcccgttccgacttcgccgacgaggaagtc
tcctcgaccgaatccatcggtggcggcgaaggcgaagcgtaa
DBGET
integrated database retrieval system
