Herbaspirillum huttiense: E2K99_02270
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Entry
E2K99_02270 CDS
T05937
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
hhf
Herbaspirillum huttiense
Brite
KEGG Orthology (KO) [BR:
hhf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hhf03016
]
E2K99_02270
Enzymes [BR:
hhf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
E2K99_02270
Transfer RNA biogenesis [BR:
hhf03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
E2K99_02270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
QBP73907
LinkDB
All DBs
Position
500789..502921
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AA seq
710 aa
AA seq
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MNLLFEESGDFKAGSIMTQQGESYQVEMASGKRAKVKSRDALLQFAAPAPQELMQQAQAI
ADEVDLDFLWEVAGEEEFGFTDLAAEYFGHAPLPPEAAGLLLCLHRAPIYFYKKGRGRYK
AAPQASLQAALAGLEKKKQQLAAQAVYVEELKAHKLPEAFRPIALQLLFKPDKNGIEFKA
LDAAAKEMQTTPQRLMLAAGGVASPKDLHYARFLYEFFPRGTGFPAIDIPPAATDLPLAD
VQAFSIDDVTTTEIDDALSVTRLPDGKLRVGIHIAAPGLAIKRGDAIDAIARARMSTVYM
PGEKITMLPDDLVATYTLDAGAARPALSLYATLDAASWEVLGTETRAELVPIAANLRHND
LDELVTEEALAENRGDYPHKEEIALLWQWVQLLEQGRMAKRESFGLRPEQNNRVDFNFYV
ENDVVSIVRRRRGAPLDKIVAELMIFANSTWGKLMADHGVPGIYRAQGGGAGGWAAKMQV
RMVTHAAPHQGLGVDQYAWSTSPLRRYTDLVNQWQILACIEHGVTAPLVAPFKPRDADLF
AIVSGFDAAYSGYADFQSTMERYWCLRWLAQENARTVEAVVLKDEILRLVEIPLVLRMPG
LPQLARGLQVKLDLLRWDEVDLTVEARLLEVPAAAAQALASDLGEDDDELLEGMASMGSE
EQGEEAAAEQNSVQNNVQNDAQDSVQENAQEERHPDAADADENPSAQAAQ
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgaatttattgttcgaagaatccggcgatttcaaggccggctccatcatgacccagcag
ggcgagtcctaccaagtcgagatggcctccggcaagcgcgccaaagtcaagtcgcgcgat
gcgctgctgcaattcgctgcccccgcgccgcaggagctgatgcaacaggcccaggccatc
gctgatgaagtcgacctggatttcctgtgggaagtggccggcgaagaagaattcggtttc
accgacctggccgccgagtatttcgggcatgccccgctgccgccggaagcggccggcctg
ctgctgtgcctgcatcgcgcgccgatctatttctacaagaagggtcgtggtcgctacaag
gcggccccgcaagcctcgctgcaggccgccctggccgggctggaaaagaagaagcagcaa
ctggccgcacaggccgtgtatgtggaagaactcaaggcccacaaactgccggaagccttc
cgccccatcgccctgcaactgctcttcaaaccggacaagaacggcatcgaattcaaggcc
ctggacgccgccgccaaggaaatgcagaccaccccgcaacgcctgatgctggctgccggt
ggcgtggcctcgcccaaggatctacattacgcgcgtttcctctacgaattcttcccgcgc
ggcaccggcttcccggccatcgatatcccgccggcggctaccgacctgccgctggccgat
gtccaggctttctccatcgatgacgtgaccaccaccgagatcgatgatgccctgtcggtc
acccgcctgccggacggcaagctgcgcgtgggcatccacatcgccgcaccgggtctggcc
atcaagcgtggcgatgcgatcgatgcgattgcgcgtgcgcgcatgtccaccgtctacatg
ccgggcgaaaagatcaccatgctgccggacgacctggtggccacttatacgctggatgcc
ggggctgcgcgtcctgcgctgtcgctgtatgccacgctggatgcagccagctgggaagtg
ctgggcaccgagacccgcgccgagctggtgccgatcgccgccaacctgcgccacaacgac
ctcgacgagctggtcaccgaggaagcgctggccgagaatcgcggcgactatccgcacaag
gaagagatcgcgctcctgtggcagtgggtgcaattgctggaacagggccgcatggccaag
cgcgagagtttcggcctgcgcccggaacagaacaatcgcgtcgacttcaatttctatgtc
gagaacgatgtggtgagcatcgtgcgccgccgccgtggtgcgccgctggacaagatcgtg
gccgagctgatgatcttcgccaacagcacctggggcaagctcatggccgatcacggcgtg
ccgggcatctaccgcgcacaaggcggcggggccggtggctgggccgccaagatgcaggtg
cgcatggtcactcacgccgcgcctcaccagggcctgggcgtggatcaatatgcctggagc
acctcgccgctgcgccgctataccgacctggtcaaccagtggcagatcctggcctgcatc
gagcacggcgtgaccgcgccgctggtggcgcccttcaagccgcgcgatgccgatctcttc
gccatcgtctcgggcttcgatgcggcttactccggctatgccgatttccagtcgaccatg
gaacgctactggtgcctgcgctggctggcgcaggaaaacgcccgtaccgtggaagcggtg
gtgctcaaggatgaaatcctgcgcctggtcgagatcccgctggtgctgcgcatgccgggc
ctgccgcagctggcgcgcggcctgcaggtcaagctggatctgctgcgctgggacgaggtc
gacctgaccgtggaggcgcgcctgctggaagtgccggccgctgcggctcaggcgctggcc
agcgatctcggtgaagacgatgatgagttgctcgaaggcatggcctccatgggcagcgaa
gaacagggcgaggaagccgctgccgagcaaaattcggtacagaacaatgtacagaacgat
gcacaggattccgtacaggaaaatgcacaggaagagcgacatcccgacgccgccgatgcc
gacgaaaacccgtcggcccaagccgcgcaatga
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