Herbaspirillum huttiense: E2K99_02565
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Entry
E2K99_02565 CDS
T05937
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
hhf
Herbaspirillum huttiense
Pathway
hhf03030
DNA replication
hhf03410
Base excision repair
hhf03420
Nucleotide excision repair
hhf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hhf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E2K99_02565 (polA)
03410 Base excision repair
E2K99_02565 (polA)
03420 Nucleotide excision repair
E2K99_02565 (polA)
03440 Homologous recombination
E2K99_02565 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hhf03032
]
E2K99_02565 (polA)
03400 DNA repair and recombination proteins [BR:
hhf03400
]
E2K99_02565 (polA)
Enzymes [BR:
hhf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
E2K99_02565 (polA)
DNA replication proteins [BR:
hhf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E2K99_02565 (polA)
DNA repair and recombination proteins [BR:
hhf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
E2K99_02565 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E2K99_02565 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
QBP73963
LinkDB
All DBs
Position
562247..565009
Genome browser
AA seq
920 aa
AA seq
DB search
MQKTLLLVDGSSYLYRAFHALPDMRNAEGAPTGALYGIINMLRRLRNDYPASYVACVFDA
KGKTFRDDLYPDYKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDVIGTLSVQ
ATAAGLDTIVSTGDKDMAQLVNEHVTLVNTMSNEVLDIAGVTAKFGVPPERIVDYLSLIG
DTVDNVPGVEKCGPKTAVKWLSAYGSLDGVMANADKISGVVGENLRKALDWLPQGRVLVT
VKTDCDLSEHMKSILESLTMQPVDKEVLKDLFTRYNFRTWLRELGEGSEPTAAKTPLVGA
SAAAALEAPAQGGLFAPAPKVEYETVFTDAQLDQWIATINAAELTAVDTETTSLDAMQAE
LVGISLCCEPGRAAYIPVAHNYQDAPEQLSREHVLAKLKPWLEDASKPKLGQHLKYDSHI
FANYGVRLAGVKHDTLLESYVFESHRPHDMDSLAARHLERKTITYAEVCGKGASQIGFNE
VAIERATEYAAEDAEVTLALHHAMWPQIEHDDKLRFIYEKIEVPTSVVLQKIERNGVLID
SERLGQQSHDLGKRMLEIEQQAYDLAGQPFNLNSPKQLGEILFGKLELPVVKKTASGAPS
TDEEVLQKLAEDYPLPKVLLDYRGLAKLKSTYTDKLPKMINPATGRVHTNYAQAVAVTGR
LSSNEPNLQNIPIRTPEGRRIREAFVAPEGCVIVSADYSQIELRIMAHISEDENMLKAFA
NNEDIHKATAAEIFGIAPEQVESEQRRYAKVINFGLIYGMSAFGLAGNLGIERSAAQMYI
DKYFMRFSGVKRYMDETRLQAKARGYVETVFGRRLWLPEINSPNGPRRQGAERAAINAPM
QGTAADLIKLAMIAVQDWLESTGMKSRMIMQVHDELVLEVPQEELAVVREKLPELMKNVA
ELKVPLLAEVGIGKNWDEAH
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaaccttgttgttagttgatggttccagttacctctatcgggctttccatgca
ctgcccgatatgcgtaacgcggaaggcgcgcccaccggtgcgctgtacggcatcatcaat
atgctgcgccgactgcgcaacgattatcccgcaagttacgttgcctgtgtgttcgacgcc
aagggcaagactttccgtgatgatctctatcccgactacaaggctacccgcaaatccatg
ccggaagacctggcattgcagatcgaaccgatccacgccgccgtgcgcgccctgggctgg
ccgatcctgatggtcgagggcatcgaggccgatgacgtcatcggtacgctctcggtacaa
gccaccgctgccggactggacaccatcgtctccaccggcgacaaggacatggcccaactg
gtcaacgaacacgttaccttggtcaacacgatgagcaatgaagttctcgacattgccggc
gtgaccgcaaaattcggcgtgccgcccgagcgcatcgtcgattacctgagcctcatcggc
gacaccgtcgacaacgtgcccggcgtcgaaaagtgcggccccaagaccgccgtgaagtgg
ctctccgcctatggctcgctggatggcgtcatggccaatgccgacaagatcagcggcgtg
gtcggcgagaatcttcgcaaggccctggactggctgccgcaaggccgcgtgctggtcacc
gtcaagaccgattgcgatctgtcggagcacatgaagtccatcctcgaatcgctgaccatg
cagccggtggacaaggaagtgctcaaggatctcttcacccgctacaacttccgcacctgg
ctgcgcgaactgggcgagggcagcgagcccaccgctgccaagaccccgctggtcggtgcc
agcgccgctgcagcactggaagcgccggcccagggtggcctctttgctcctgcgcccaag
gtcgagtacgagaccgtgttcaccgatgcgcaactggatcagtggatcgccaccatcaac
gccgccgaactgaccgccgtcgataccgagaccacctcgctggatgcgatgcaggccgag
ctggtcggcatctcgctgtgctgcgagccgggccgtgctgcctacattccggtagcgcac
aactaccaggatgcacccgaacaattgtcgcgcgagcacgtgctcgccaaactgaagccc
tggctggaagacgccagcaagcccaagctcggccagcacctgaaatacgacagccacatc
ttcgccaactacggcgttcgcctggccggcgtgaagcacgacacgctgctggaatcctac
gtcttcgaatcacatcgtccgcatgacatggacagcctggctgcacgtcatctggagcgc
aagaccatcacctatgccgaggtgtgcggcaagggtgcgtcgcagatcggcttcaatgaa
gtggccattgaacgcgccaccgaatatgctgccgaagatgcggaagtcacactggccctg
catcacgccatgtggccgcagatcgagcatgatgacaagctgcgcttcatctacgagaag
atcgaagtcccgacctcggtggtgctgcagaagatcgaacgcaatggcgtgctgatcgac
agcgagcgcctgggccagcaatcgcacgatctcggcaaacgcatgctggaaatcgaacag
caggcctacgacctggccggccagcctttcaacctgaattcgcccaagcagctgggcgag
atcctcttcggcaagctggagctgccggtggtcaagaagaccgcctcgggcgcaccgtcc
accgatgaggaagtgctgcagaagctggccgaggattatccgctgcccaaggtgctgctg
gactatcgcggcctggccaagctcaagtccacctataccgacaagctgcccaagatgatc
aacccggccaccggccgcgtgcataccaactatgcacaggcggtggcagtcactggtcgc
ctgtcttccaacgaaccgaacctgcagaacatcccgatccgcacgcccgaaggacgccgc
atccgcgaagccttcgtcgcacccgaaggctgcgtgatcgtctcggccgactattcgcag
atcgagctgcgcatcatggcgcacatctccgaagacgagaacatgttgaaggccttcgcc
aacaacgaagacatccacaaggccaccgccgccgaaatcttcggcatcgcgcccgagcag
gtcgagtccgagcagcgccgctatgccaaggtcatcaacttcggcctgatctacggcatg
agcgcctttggtctggccggcaacctgggcatcgaacgctctgccgcgcagatgtacatc
gacaagtacttcatgcgcttctcgggcgtgaagcgctacatggatgaaacgcgcctgcag
gccaaggcgcgcggctacgtggaaacggtcttcggccgccgcctgtggctgcccgagatc
aactcgcccaacggcccgcgccggcaaggcgccgagcgtgcggcgatcaatgcgcccatg
cagggcaccgcggccgacctcatcaagctggccatgattgccgtgcaggactggttggag
tcgactggcatgaagagccgcatgatcatgcaggtccacgatgaactggtgctggaagtg
ccccaggaggagctggcggtggtgcgtgaaaagctgcctgaattgatgaaaaatgttgcg
gaactgaaagttcccttgcttgccgaggtcggaatcggtaagaattgggacgaagcgcat
taa
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