Herbaspirillum huttiense: E2K99_08465
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Entry
E2K99_08465 CDS
T05937
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hhf
Herbaspirillum huttiense
Brite
KEGG Orthology (KO) [BR:
hhf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hhf03032
]
E2K99_08465
03400 DNA repair and recombination proteins [BR:
hhf03400
]
E2K99_08465
Enzymes [BR:
hhf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
E2K99_08465
DNA replication proteins [BR:
hhf03032
]
Prokaryotic type
DNA Topoisomerases
E2K99_08465
DNA repair and recombination proteins [BR:
hhf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
E2K99_08465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
DUF1690
Motif
Other DBs
NCBI-ProteinID:
QBP75060
LinkDB
All DBs
Position
complement(1898729..1899964)
Genome browser
AA seq
411 aa
AA seq
DB search
MDRIAAASEQSSSSSSPSPSAPPPADARHQYEAIDIARANQLRYVNDGMPGIRRRRRGKG
FAYHDAHGELIRDDDVVARLKSLAIPPAWEDVWISPHANGHIQATGRDARGRKQYRYHAR
WRSVRDDAKYLRMISFARALPTIRRVVEQDLKRPGLHRQKVLAAVVHLLQTTFMRVGNDE
YAKQNQSFGLTTLRHRHVRVDGSDVLFRFRGKSGVQHEIKLHDPYVARIIRKMRELPGQE
LFQYVDDEGERHCIDSGDVNAYLREAAGEDFSAKDFRTWAGTVLATLALQAFERVDSQAQ
AKQNVVRAIENVARRLGNTPSICRKCYVHPAVIESYLDGSFAERLEERVQAELVEELQDL
SPEEAAVLALLQQRLQEAEQQPARKPRRKPAARTATASVPRRKAARPAARA
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggatcgtatcgccgcagcgtccgaacaatcttcatcatcatcatcgccgtcgccttcg
gctccgccgcccgccgatgcccgccatcagtacgaggccatcgacatcgcccgcgccaac
cagctgcgctatgtcaacgacggcatgccgggcatacgccgccgccggcgtggcaagggc
ttcgcttatcacgatgcgcacggcgagctcattcgtgatgacgatgtggtggcgcgcctc
aagtctctggccatcccgcccgcttgggaagacgtctggatcagcccgcacgccaacggc
cacatccaggccaccggacgcgatgcgcgcgggcgcaagcagtatcgctatcacgcacgc
tggcgctcggtgcgcgatgatgccaagtacctgcgcatgatcagttttgcgcgcgcgctg
ccgaccatccgccgcgtggtggagcaagacctgaaacgtcccggcctgcatcggcagaaa
gtcttggccgctgtcgtgcatctgctgcagaccaccttcatgcgcgtgggcaatgacgaa
tacgccaaacagaatcaatccttcggcctgaccacgctgcgccatcgccacgtgcgtgtg
gatggcagcgatgtgctgttccgcttccgcggcaagagcggcgtgcagcatgaaatcaag
ctgcacgatccctatgtggcccgcatcatccgcaagatgcgcgagttgccggggcaggaa
ctgttccagtacgtggatgacgagggcgagcgccactgcatcgattcgggtgacgtgaat
gcctatctgcgtgaagcggctggtgaggatttcagtgccaaggatttccgcacctgggcc
ggcacggtgctggccacgctggcgctgcaggccttcgagcgggtggactcgcaggcgcag
gccaagcagaacgtggtgcgcgccatcgagaacgtggcgcgccgcctgggcaatacgcct
tccatctgccgcaagtgttacgtgcatcctgccgtcatcgaaagctacctggacggcagt
tttgcggagcggctggaagaacgggtgcaggccgaactggtggaagagttgcaggatctg
tcaccggaggaagccgctgtactggccttgctgcaacagcgtctgcaagaggcggaacaa
caaccggcccgcaagccacgtcgcaaacctgccgcgcgcaccgccaccgcttcggtgccg
cgtagaaaagcggcgcggccagcggcacgcgcctga
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