Herbaspirillum huttiense: E2K99_09595
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Entry
E2K99_09595 CDS
T05937
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hhf
Herbaspirillum huttiense
Pathway
hhf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E2K99_09595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhf03019
]
E2K99_09595
03009 Ribosome biogenesis [BR:
hhf03009
]
E2K99_09595
Enzymes [BR:
hhf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E2K99_09595
Messenger RNA biogenesis [BR:
hhf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E2K99_09595
Ribosome biogenesis [BR:
hhf03009
]
Prokaryotic type
rRNA processing factors
E2K99_09595
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QBP75260
LinkDB
All DBs
Position
complement(2150261..2153500)
Genome browser
AA seq
1079 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNY
GEERHGFLPFKEVARTYFKEGIDVRNASIKEALREGQEIIVQVEKEERGNKGAALTSFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPNGMSVIARTAGIGRNVDELQ
WDLNYLMQLWRAIEGAGQTGSGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQ
QFMAHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV
DVNSARATRGSDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGR
LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ
VLRIIQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVTVIMIPNKHLETPH
YKMERIKHDDPRLDDAQASYTMAEQADTDIGYSKRQKEEERPRQEAVVKGITPDQPAPIV
ERKAPEPVAAPVPPPTLAPESGLLGKIFAFFRKKPVAPVEVPAPVEAKAPAKREGDRNGR
GGDRNGRNRNRGERGERGDRAERGERNAEQRAPRGPAAVELKTGDAAEAKQARAPRGPRE
PKEGREPREGREVREGREPREAREGQEPKEARRNEPREAREPREPREGREPREGREGREP
RQPREPRAPRSERKDPKAEEGLPLEAALAAGAATAGVAVAAGAVALSNDEQAAKVEAAQV
EGSEGADGVEGAEAAEGGTEPRRRRRRGGRNRHRRERDENGNVIDNGEGEANEQSEAGEG
VETAVVASAAAASVNVETVAADTSVAPVEVAQAAVAQASFAASPVPEQAPAEAAVHVESG
VNSVEAVAAAAAEATQAVFSNQPAIEPAAPSIDASFAPTPAFEPVQAPVAAPAASEAPVE
VVHATAAAPAVPQQISLLDAVEASPAPVAVEPAPVVAEAAPAPAAAPAVAASTGNAARSE
SLEQMLSQAGLTLATTDPVKLRAAQEAAAAFVPAPHVPRERKPLPPQSTEPLVQVETRR
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttgttcaacgccacgcagcaggaagaactgcgcgtagcgatcgttgac
ggtcagaaactgatcgacatcgacatcgaaaccaccggacgcgagcagcgcaagtccaac
atctacaagggcgtcatcacccgcatcgagccctcgctggaagcctgcttcgtcaactac
ggcgaagaacgccacggcttcctgcccttcaaggaagtggcccgcacctatttcaaggaa
ggcattgacgtccgcaacgccagcatcaaggaagcgctgcgcgaaggccaggaaatcatc
gtccaggtcgagaaggaagaacgcggcaacaagggcgcggccctgacctcgttcatctcc
ctggccggccgctacctggtgctcatgcccaacaacccgcgcggtggcggcgtgtcgcgc
cgtgtcgaaggcgaagaccgccaggaactgcgcgaaaccatggacaagctggacctgccc
aacggcatgtccgtcatcgcccgcaccgccggcatcggccgcaacgtcgatgaactgcag
tgggacctgaactacctgatgcaactctggcgcgccatcgaaggcgccggccagaccggc
tcgggcgccttcctgatctaccaggaatcgtcactggtcatccgcgccatccgcgactac
ttccagcccgacatcggcgaaatcctgatcgataccgacgacatccacgaccaggcccag
cagttcatggcccacgtgatgccggacatggtccaccgcgtcaagcgctaccgcgacgac
gtgccgctgttctcgcgcttccagatcgaacaccagatcgagaccgcctactcgcgtacg
gtcccgctgccttccggcggcgccatcgtcatcgaccacaccgaagccctggtgtcggtg
gacgtgaactcggcgcgcgccacccgtggcagcgacatcgagaccaccgccttcaacacc
aacctcgaagccgccgatgaagtggcccgccagttgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggagaactccaagaaccagcgcgaagtggaaggccgt
ctgaaggacgccctgcaccacgaccgcgcccgcgttcagatgggcaagatctcccgcttc
ggcctgatggaactgtcgcgccagcgcctgcgtccgtcgctgtccgaaggcagccacgtg
acctgcccgcgttgcaacggcaccggccacatccgcgataccgaatcctccgccctgcag
gtgctgcgcatcatccaggaagaggcgatgaaggaaaattcagccgcgatccacgtgcaa
gcgccggtggacgtagccgccttcctgctcaatgaaaaacggggcgaaatcctgaagatc
gagacgcgccatcgcgtcaccgtcatcatgatccccaacaagcacctggaaaccccgcac
tacaagatggaacggatcaagcacgacgatccgcgcctggacgacgcccaagccagctac
accatggccgagcaagccgataccgacatcggctacagcaagcgccagaaggaagaagaa
cgtccgcgccaggaagccgtggtcaagggcatcacccccgaccagccggcccccatcgtc
gaacgcaaggccccggaaccggtggctgcccccgtaccgccgccgaccctggcgccggaa
tcgggtctgctgggcaagatcttcgccttcttccgcaagaagccggttgctccggtggaa
gtgccggccccggtcgaagccaaggcgccggccaagcgcgaaggtgatcgcaatggccgt
ggcggcgaccgcaacggccgcaaccgcaaccgtggtgaacgcggtgagcgtggcgatcgc
gccgaacgtggcgagcgcaatgcagagcagcgtgcaccccgtggcccggccgccgtcgaa
ctgaagaccggcgacgccgctgaggccaagcaggcccgtgcgccgcgtggtccgcgcgaa
ccgaaggaaggccgcgaaccgcgtgaaggccgtgaggtgcgcgagggccgtgagccgcgc
gaagcccgcgaaggccaggaaccgaaggaagcccgccgcaacgaaccgcgtgaagcccgt
gagccccgcgaaccgcgcgaaggccgcgagccgcgcgagggtcgtgaaggccgtgaaccg
cgccagccgcgtgaaccgcgcgccccgcgtagtgaacgcaaggaccccaaggccgaggaa
ggcctgccgctggaagccgctctggctgccggtgcagccaccgcaggcgtagcggttgct
gcaggtgccgtggccctgtccaatgacgagcaagccgccaaggtggaagctgctcaagtc
gaaggttccgaaggcgcagatggcgtcgaaggtgcggaagctgccgaaggcggcaccgag
ccgcgtcgtcgtcgtcgccgtggtggccgcaaccgtcatcgtcgcgaacgtgatgaaaac
ggcaacgtgatcgacaacggcgaaggtgaagccaacgagcaatccgaagccggcgaaggt
gtcgagaccgccgtggtggccagcgccgctgctgccagcgtgaacgtcgagaccgtcgct
gccgacacttcggtggctccggtggaagtggctcaagccgctgtggcgcaagcttcgttc
gccgcctcgccggttccggaacaagccccggctgaagctgccgtgcacgtggaaagcggc
gtgaactcggtcgaagctgtggccgctgccgctgccgaagcgacccaggccgtgttctcg
aaccagccggccatcgaaccggcggccccgtcgatcgacgccagcttcgccccgaccccg
gccttcgagccggtgcaggcccccgttgctgctccggccgcatcggaagccccggtcgag
gtggtgcacgctactgctgcagccccggccgtgccgcaacagatcagcctgctggacgcc
gtcgaagccagcccggcaccggtggctgtcgaaccggctccggtggtggctgaagccgca
ccggcgcccgctgctgcccccgcagtcgcggccagcaccggcaacgctgcccgttcggag
tcgctggagcagatgctgtcgcaagccggcctgaccttggccaccacggacccggtcaag
ctgcgcgctgcccaggaagccgctgctgccttcgtcccggcaccgcacgtgccgcgcgag
cgcaagccgctgccgccgcagtcgaccgaaccgctggtgcaggtcgaaacccgccgttaa
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